TGAC earlham-galaxytools issues

TGAC / earlham-galaxytools

Galaxy tools and workflows developed at the Earlham Institute

https://tgac.github.io/earlham-galaxytools/

MIT License

14 stars 13 forks source link

issues

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Update ete_macros.xml

#168 paulzierep closed 4 months ago
1
Update TreeBest_best.xml

#167 paulzierep closed 4 months ago
1
lotus2 DB issues

#166 paulzierep opened 7 months ago
8
Update LotuS2 wrapper to 2.28.1

#165 nsoranzo closed 7 months ago
0
Add bio.tools link

#164 paulzierep closed 8 months ago
1
ete3: allow taxids in species tree input

#163 bernt-matthias opened 1 year ago
0
Update GitHub actions from tools-iuc

#162 nsoranzo closed 8 months ago
0
Update LotuS2 wrapper to 2.23 . Re-enable LULU by default

#161 nsoranzo closed 1 year ago
0
Don't exit immediately if lotus2 fails

#160 nsoranzo closed 1 year ago
0
Lotus2 2.21

#159 nsoranzo closed 1 year ago
0
ETE scripts patch to fix scripts to handle more than one _

#158 anilthanki closed 1 year ago
0
Updates tree splitting algorithms

#157 anilthanki closed 1 year ago
0
Transeq bug

#156 anilthanki opened 1 year ago
2
Improvements to GSTF workflow

#155 anilthanki opened 1 year ago
0
adds new genetree splitting method and test data

#154 anilthanki closed 2 years ago
0
make lineage generator more robust

#153 bernt-matthias closed 2 years ago
1
Update LotuS2 to 2.19

#152 nsoranzo closed 2 years ago
0
unique constraint error

#151 rob123king opened 2 years ago
3
adds an option to specify output dir for hcluster outputs

#150 anilthanki closed 2 years ago
2
Update lotus2 to 2.09.2

#149 nsoranzo closed 3 years ago
0
adds synteny info to GSTF prep tool

#148 anilthanki opened 3 years ago
1
Lotus2 tests

#147 hildebra closed 3 years ago
0
LotuS2: Zip output format instead of tar.gz

#146 hildebra closed 3 years ago
0
Update to lotus2 2.07

#145 hildebra closed 3 years ago
0
Add mapping and custom taxonomy database

#144 nsoranzo closed 3 years ago
0
Gstf tutorial

#143 anilthanki closed 3 years ago
1
Fix OTU biom output format

#142 nsoranzo closed 3 years ago
0
Update lotus2 to 2.06

#141 nsoranzo closed 3 years ago
0
Add LotuS2 wrapper

#140 nsoranzo closed 3 years ago
0
Update t_coffee to version 13.45.0.4846264

#139 nsoranzo closed 3 years ago
4
smart_domains: update test data outputs

#138 nsoranzo closed 3 years ago
0
Add missing Python requirement

#137 nsoranzo closed 3 years ago
0
Clarify multiple CDS IDs error message

#136 nsoranzo closed 3 years ago
0
Add fasta.gz support to gstf_preparation

#135 nsoranzo opened 3 years ago
0
Add option to split by dups or using TreeKO algorithm

#134 anilthanki closed 3 years ago
5
Fix apoc and Ensembl-REST tools

#133 nsoranzo closed 3 years ago
0
Bump ETE version

#132 bernt-matthias closed 3 years ago
18
Convert ``is_canonical`` to ``bool`` before database insert

#131 nsoranzo closed 3 years ago
0
Gstf patch 2

#130 anilthanki closed 3 years ago
1
Update Travis configuration

#129 nsoranzo closed 3 years ago
0
Ete genetree splitter

#128 anilthanki closed 3 years ago
0
Gstf extend

#127 anilthanki closed 3 years ago
2
Docker data

#126 anilthanki closed 4 years ago
0
Docker gstf readme

#125 anilthanki closed 4 years ago
0
Initial docker commit for GSTF workflow

#124 anilthanki closed 4 years ago
0
Skip non-protein-coding transcripts

#123 nsoranzo closed 4 years ago
0
Gstf patch

#122 anilthanki closed 3 years ago
1
updates with Ensembl REST API

#121 anilthanki closed 4 years ago
0
Deal with multiple CDS IDs for the same transcript

#120 nsoranzo opened 4 years ago
0
adds a tools to find gene copy number from newick file

#119 anilthanki closed 4 years ago
1