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I found this issue when trying the [tutorial](https://carpentries-incubator.github.io/cwl-novice-tutorial/02-shell_to_cwl/index.html) with Podman 5.0.2 that is bundled with the latest [Podman Desktop]…
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### Description of the bug
Hi everyone,
I'm new to this workflow / pipeline and had just installed the latest version of nextflow. I was trying to run `nextflow run nf-core/viralrecon -profile c…
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### Description of the bug
filename pattern claims to be incorrect but the input on the design.csv file matches with the protocol guide and the fileneames was changed to match the names of the des…
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# Genomics web - Fundamentos de NGS
[https://franciscoascue.github.io/Rgenomics/modulo7.html](https://franciscoascue.github.io/Rgenomics/modulo7.html)
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Dear,
I am using Circle-map to predict ecDNA，My data is download from SRA (for example, https://www.ncbi.nlm.nih.gov/sra/?term=SRR9089606). I firstly downsample this data to about 10X by seqtk like …
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Hello,
I'm sorry for posting yet another installation troubleshooting request, but I've tried browsing the solved and unsolved issue boards and still just can't find a solution.
My Mac has an M…
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Hi:
I have an unsolvable problem when running this code.I get this error message whenever I try to do anything with conda.
` is not being recognised or the file is ignored by som…
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**Snakemake version**
Latest version
> 5.23.0
Brought in with:
```
$ mamba create -c conda-forge -c bioconda -n snakemake snakemake
$ conda activate snakemake
```
**Describe the bug*…
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### Description of the bug
When specifying an existing STAR index using the --star_index parameter the pipeline crashes and gives the following error:
```
Missing process or function map([Script…