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nf-core
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scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
https://nf-co.re/scrnaseq
MIT License
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154
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Bump version to 2.8.0dev
#342
grst
closed
5 hours ago
1
cellranger_count.py: capture stderr and stdout
#341
nick-youngblut
opened
1 day ago
2
`--cellranger_index` only appears to work if `--validate_params false` provided
#340
nick-youngblut
opened
3 days ago
0
scrnaseq will not recognize my genome file path
#339
jjovelc
opened
5 days ago
0
Specify cellranger version
#338
maggiebr0wn
opened
2 weeks ago
1
Include cellrangerarc in checker
#337
fmalmeida
closed
3 weeks ago
1
v2.7.0 release
#336
grst
closed
23 hours ago
1
Add `check_max` to AlevinQC time limit
#335
nictru
closed
4 weeks ago
1
Time limit of AlevinQC
#334
nictru
closed
3 weeks ago
3
Trimming R1 fast files in all aligners
#333
ChristopherMancuso
opened
1 month ago
4
cellranger-multi implementation follow-up
#332
fmalmeida
opened
1 month ago
0
Running 'cellranger-arc count' with existing genome index
#331
ashwinikumarkulkarni
opened
1 month ago
0
Error with CONCAT_H5AD
#330
ashwinikumarkulkarni
opened
1 month ago
2
Cellranger mkref resource flags incorrect
#329
RPSeaman
opened
1 month ago
1
Important! Template update for nf-core/tools v2.14.1
#328
nf-core-bot
closed
1 month ago
1
'star' in genome configrations ignored
#327
pinin4fjords
opened
1 month ago
1
Important! Template update for nf-core/tools v2.14.0
#326
nf-core-bot
closed
1 month ago
1
Bump version for v2.7 release
#325
grst
closed
3 weeks ago
3
Sample merging does not work if files are named the same
#324
nick-youngblut
opened
1 month ago
0
allow for extra columns in the sample sheet
#323
nick-youngblut
closed
1 month ago
1
Make it work without specifying GTF file
#322
grst
closed
1 month ago
1
Add cellrangerarc snippet back
#321
fmalmeida
closed
1 month ago
2
Bump version to 2.6.0
#320
grst
closed
2 months ago
3
cellranger mkref with multiple species
#319
MaestSi
opened
2 months ago
0
Release v2.6.0
#318
grst
closed
1 month ago
1
316 update cellranger modules to latest nf coremodules versions
#317
fmalmeida
closed
2 months ago
4
Update cellranger modules to latest nf-core/modules versions
#316
fmalmeida
closed
2 months ago
1
cellranger_count.py: remove any existing output directory
#315
nick-youngblut
opened
2 months ago
3
Use compressed (gzip) fasta and gtf
#314
zeehio
closed
2 months ago
3
allow use of .gz when specifying fast and gtf
#313
ChristopherMancuso
opened
3 months ago
4
Update to the latest simpleaf
#312
DongzeHE
opened
3 months ago
3
Merging merge_2.5 branch into master
#311
corey-hayford
closed
3 months ago
2
Clean up mtx conversion code
#310
grst
opened
3 months ago
0
Important! Template update for nf-core/tools v2.13.1
#309
nf-core-bot
closed
3 months ago
2
Make scrnaseq pipeline v2.5.1 compatible with nextflow v22.04.0
#308
asmaali98
closed
3 months ago
1
Flexible input read format with STARsolo with --soloBarcodeReadLength
#307
wblashka
closed
3 months ago
1
Merged in 2.13.
#306
apeltzer
closed
3 months ago
2
Important! Template update for nf-core/tools v2.13
#305
nf-core-bot
closed
3 months ago
0
Samplesheet Check Bug
#304
pablasimarjot
closed
3 months ago
1
Issues with samplesheet.csv as well as additional columns in the samplesheet
#303
SethMagnusJarvis
closed
3 months ago
3
Avoid error on unknown headers in input.csv
#302
zeehio
closed
3 months ago
4
Fix issue 81, "call empty droplets"
#301
fmalmeida
closed
3 months ago
17
Fix to issue 299 and 297
#300
heylf
closed
3 months ago
9
When aligner is cellrangerarc the step MTX_TO_SEURAT failed
#299
wzheng0520
opened
4 months ago
3
Important! Template update for nf-core/tools v2.12
#298
nf-core-bot
closed
4 months ago
2
The cellrangerarc cannot start successfully
#297
wzheng0520
closed
3 months ago
2
Utilize central modules for simpleaf workflow
#296
apeltzer
opened
5 months ago
1
Bump version to 2.6.0dev
#295
grst
closed
5 months ago
1
kallisto|bustools 0.28.2 update
#294
gennadyFauna
closed
3 months ago
6
Patch release v2.5.1
#293
grst
closed
5 months ago
1
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