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nf-core
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scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
https://nf-co.re/scrnaseq
MIT License
209
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166
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Make it work without specifying GTF file
#322
grst
closed
4 months ago
1
Add cellrangerarc snippet back
#321
fmalmeida
closed
5 months ago
2
Bump version to 2.6.0
#320
grst
closed
5 months ago
3
cellranger mkref with multiple species
#319
MaestSi
opened
5 months ago
0
Release v2.6.0
#318
grst
closed
4 months ago
1
316 update cellranger modules to latest nf coremodules versions
#317
fmalmeida
closed
5 months ago
4
Update cellranger modules to latest nf-core/modules versions
#316
fmalmeida
closed
5 months ago
1
cellranger_count.py: remove any existing output directory
#315
nick-youngblut
opened
5 months ago
3
Use compressed (gzip) fasta and gtf
#314
zeehio
closed
5 months ago
3
allow use of .gz when specifying fast and gtf
#313
ChristopherMancuso
closed
1 month ago
5
Update to the latest simpleaf
#312
DongzeHE
opened
6 months ago
5
Merging merge_2.5 branch into master
#311
corey-hayford
closed
6 months ago
2
Clean up mtx conversion code
#310
grst
opened
6 months ago
0
Important! Template update for nf-core/tools v2.13.1
#309
nf-core-bot
closed
6 months ago
2
Make scrnaseq pipeline v2.5.1 compatible with nextflow v22.04.0
#308
asmaali98
closed
6 months ago
1
Flexible input read format with STARsolo with --soloBarcodeReadLength
#307
wblashka
closed
7 months ago
1
Merged in 2.13.
#306
apeltzer
closed
7 months ago
2
Important! Template update for nf-core/tools v2.13
#305
nf-core-bot
closed
7 months ago
0
Samplesheet Check Bug
#304
pablasimarjot
closed
6 months ago
1
Issues with samplesheet.csv as well as additional columns in the samplesheet
#303
SethMagnusJarvis
closed
6 months ago
3
Avoid error on unknown headers in input.csv
#302
zeehio
closed
6 months ago
4
Fix issue 81, "call empty droplets"
#301
fmalmeida
closed
6 months ago
17
Fix to issue 299 and 297
#300
heylf
closed
6 months ago
9
When aligner is cellrangerarc the step MTX_TO_SEURAT failed
#299
wzheng0520
opened
8 months ago
3
Important! Template update for nf-core/tools v2.12
#298
nf-core-bot
closed
7 months ago
2
The cellrangerarc cannot start successfully
#297
wzheng0520
closed
6 months ago
2
Utilize central modules for simpleaf workflow
#296
apeltzer
opened
8 months ago
1
Bump version to 2.6.0dev
#295
grst
closed
8 months ago
1
kallisto|bustools 0.28.2 update
#294
gennadyFauna
closed
6 months ago
6
Patch release v2.5.1
#293
grst
closed
8 months ago
1
MuData conversion
#292
grst
opened
8 months ago
0
Nf-test
#291
grst
closed
7 months ago
6
Tests for cellranger-arc
#290
grst
opened
8 months ago
1
Update or remove universc
#289
grst
opened
8 months ago
8
Fix cellranger and bump version to 2.5.1
#288
grst
closed
8 months ago
11
Bump version to 2.6.0dev
#287
grst
closed
8 months ago
1
GHGA contribution to README
#286
heylf
closed
8 months ago
1
Use nf-validation plugin
#285
grst
closed
6 months ago
1
Fix time limits
#284
grst
closed
8 months ago
1
Release v2.5.0
#283
grst
closed
8 months ago
5
bump version to 2.5.0 for release
#282
grst
closed
9 months ago
1
increase time limits
#281
grst
closed
9 months ago
1
Bump up kb to 0.28.0
#280
gennadyFauna
closed
6 months ago
3
Important! Template update for nf-core/tools v2.11.1
#279
nf-core-bot
closed
9 months ago
2
Important! Template update for nf-core/tools v2.11
#278
nf-core-bot
closed
9 months ago
1
Crash when specifying existing --star_index using star aligner
#277
ffmmulder
closed
1 month ago
10
Adding cellrangermulti subworkflow
#276
fmalmeida
closed
4 months ago
22
exceeded running time limit (8h)
#275
luozhy88
closed
8 months ago
3
Adding cellranger-arc (multiome scRNA-seq + scATAC support)
#274
heylf
closed
9 months ago
13
Better support for custom chemistries
#273
grst
closed
11 months ago
1
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