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Abe mentioned during the presentation that it might be a good idea to make the MAF 0.01 for situations with ~1000 samples. This is a pretty easy change to make, so I'll ask Rob about it.
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This builds on earlier exploration in #280 (mappings). Mappings will be needed. @vrandezo + @danbri collaboration notes live here now.
Goal: we want to be able to write JSON-LD (or RDFa/Microdata) th…
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Hi,
I was trying to map genome-wide without LOCO the Epha4 gene in the hippocampus and got the following error. I'm really keen to see the results, please let me know how I can help/whether it's fe…
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Hey Paul I know you are traveling, but I was curious if we could install resilio-sync (I need to be root to install). Is it possible for us to have this?
https://help.resilio.com/hc/en-us/articles…
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For the renku tutorial, we need to work with the data science team to prepare and curate the data repository projects for each of the datasets that will be used.
- [ ] University enrollment data (…
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How can one make it obvious that a file link can be inserted in the fig legend. Should it be only possible at the end of the caption. Inserting it in the middle does not make much sense a priori.
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After the mapping etc is finished, we will need to normalize the read counts. The following article shows how to do this for HiC with Poisson regression
https://academic.oup.com/bioinformatics/articl…
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See here: https://github.com/datatogether/reading-datatogether#justice
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Thanks for making the analyses public @KwatME and @Kazyra - I am trying to reproduce the KRAS oncogenic signature output from notebook 2 ([`onco-gps-paper-analysis/notebooks/2 Generating Oncogenic Act…