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For OCCAMS-GB, sorting by the following columns result in infinite spinner
- Donor ID
- Core Completion
- Samples
- Raw Reads
- Sanger VC
- Last Updated
- (no problem with Alignment and Mutect2…
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EGA has confirmed staging of remaining THCA-SA whole exome data. Transfer 101 donors to Collab: https://github.com/icgc-argo/ega-file-transfer/blob/master/ega_xml/v20200915/THCA-SA/THCA-SA_WXS_Audit_I…
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## Detailed Description
It would be of interest to know whether a patient had more than one cancer earlier in their lifetime. Since the `age_at_prior_malignancy` is linked to the `cancer_type_pri…
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EGA has confirmed staging of data is complete. Transfer 20TB of data (108 donors) to Collab (https://github.com/icgc-argo/ega-file-transfer/blob/master/ega_xml/v20200915/ESAD-UK/ESAD-UK_WGS_Audit_ICGC…
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A new change has been made to rdpc gateway api which involves api structure change: https://github.com/icgc-argo/rdpc-gateway/issues/58#issuecomment-762360449, in order to be compatible with the late…
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Updated mockup: https://zpl.io/VO67P0X
with legend open showing the what the molecular lines represent: https://zpl.io/VkQopnv
![image](https://user-images.githubusercontent.com/18424138/107052994…
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From Investigation in https://github.com/icgc-argo/donor-submission-aggregator/issues/122, repeated queries to the rdpc-api is showing that the order of the response from rdpc is not guaranteed.
So…
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Prepare SONG payloads for recently EGA->Collab transferred data (https://github.com/icgc-argo/ega-file-transfer/blob/master/ega_xml/v20200915/THCA-SA/THCA-SA_WXS_Audit_ICGC28.tsv). This dataset consis…
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## Describe the bug
The `OxoG` populated in the json should be `None` when OxoG score is `NaN`:
https://github.com/icgc-argo/gatk-tools/blob/master/tools/gatk-collect-oxog-metrics/gatk-collect-oxog…
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Devleop test Data for Testing Dashboard
For DASH-CA Submit data based on:
- WXS Tumour BAM analysis: https://song.rdpc-qa.cancercollaboratory.org/studies/TEST-PR/analysis/1d891219-5b8e-4bc3-8912…