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icgc-argo
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argo-meta
This repo is used to record metadata for testing workflows
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Added intermediate-song payloads for 45 WGS PCAWG donors from the PAC…
#46
hknahal
opened
12 months ago
1
Added intermediate-song payloads for 90 WGS PCAWG donors from the PAC…
#45
hknahal
closed
12 months ago
0
OCCAMS-GB payload adjustments
#44
lindaxiang
opened
2 years ago
5
Batch5 occams gb
#43
edsu7
closed
1 year ago
6
Import APGI-AU ICGC25K RNA-Seq data to intermediate-song
#42
hknahal
closed
2 years ago
1
Batch1 - PACA-CA RNAseq metadata payloads
#41
edsu7
opened
2 years ago
0
EGA PACA-CA RNA-seq metadata payloads
#40
edsu7
opened
2 years ago
3
Collab PACA-CA RNA-seq metadata payloads
#39
edsu7
opened
2 years ago
1
Paca au rna seq
#38
hknahal
closed
2 years ago
5
Preliminary PACA-AU RNA-Seq metadata
#37
hknahal
closed
2 years ago
10
added intermediate-song payloads for 1 WGS and 7 WXS donors from ICGC…
#36
hknahal
closed
3 years ago
1
SONG payloads for 3 OCCAMS-GB donors
#35
hknahal
closed
3 years ago
1
Last batch of payload update
#34
lindaxiang
closed
3 years ago
0
Payload migration
#33
lindaxiang
closed
3 years ago
3
Investigate 7 OCCAMS-GB donors with missing raw reads in ARGO platform
#32
hknahal
closed
3 years ago
5
Investigate missing normal WXS sample for PCSI_0085 from PACA-CA
#31
hknahal
closed
1 year ago
0
Batch3 paca au wxs
#30
hknahal
closed
3 years ago
0
Prepare sequencing_experiment SONG payloads for PACA-AU WXS data (46 donors)
#29
hknahal
closed
3 years ago
3
SONG payloads for 108 donors from ESAD-UK with non-PCAWG WGS data
#28
hknahal
closed
3 years ago
0
Added SONG payloads for 20 non-PCAWG WGS donors from PACA-AU
#27
hknahal
closed
3 years ago
4
Batch2 PTC-SA WXS data
#26
hknahal
closed
3 years ago
1
Prepare SONG payloads for PACA-AU non-PCAWG WGS data
#25
hknahal
closed
3 years ago
5
Prepare SONG payloads for ESAD-UK non-PCAWG WGS data
#24
hknahal
closed
3 years ago
1
Prepare SONG payloads for THCA-SA WXS data
#23
hknahal
closed
3 years ago
2
Import donor/specimen IDs from ICGC25K which are not associated with any files in Collab
#22
hknahal
closed
3 years ago
1
Prepare SONG payloads from PCAWG WGS data from PACA-AU
#21
hknahal
closed
3 years ago
5
second batch of WXS data from 13 PACA-CA donors along with summary ta…
#20
hknahal
closed
3 years ago
0
Batch2 lusc kr wxs
#19
hknahal
closed
3 years ago
1
preliminary payloads for OCCAMS-GB validation data
#18
hknahal
closed
3 years ago
3
Mutect2 payload update due to a typo in dataType
#17
lindaxiang
closed
3 years ago
1
import-paca-ca-occams-gb
#16
rtisma
closed
3 years ago
0
non-pcawg wgs data from ESAD-UK
#14
hknahal
closed
4 years ago
0
PACA-CA WXS data - merged runs
#13
hknahal
closed
4 years ago
2
added report for PACA-CA batch 2 WGS import
#12
rtisma
closed
4 years ago
0
batch2 of non-PCAWG WGS data
#11
hknahal
closed
4 years ago
0
import luca kr ptc sa
#10
rtisma
closed
4 years ago
0
removed change to SM
#9
hknahal
closed
4 years ago
0
whole exome data from ICGC project THCA-SA. Issues included: 1. dupli…
#8
hknahal
closed
4 years ago
4
added paca-ca batch1 report
#7
rtisma
closed
4 years ago
0
updated-report-batch1-occams
#6
rtisma
closed
4 years ago
0
reimported with newest version of sequencing_experiment
#5
rtisma
closed
4 years ago
0
batch1 import report
#4
rtisma
closed
4 years ago
0
moving failing md5check to batch2
#3
rtisma
closed
4 years ago
0
🐛 PCAWG mini-bam entries should be removed
#2
junjun-zhang
closed
4 years ago
1
🐛 possible duplication of read group data between different SONG payloads
#1
junjun-zhang
closed
4 years ago
1