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Hi，I run the juicer_tools with following command:
java -jar $JUICER/CPU/common/juicer_tools.jar hiccups --cpu --threads 4 -r 100000 --ignore-sparsity $DIR/aligned/inter_30.hic inter_30.hic.hiccups
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Hello,
I'm trying to load .hic data from the Juicebox archives on the desktop version, but for some reason it cannot access the .hic hosted online.
I'm running Juicebox version 1.11.08 .jar file …
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**Describe the bug**
juicer_tools.jar addNorm (1.8.9) on an old zebrafish hic file (generated by 1.8.9) fails to converge and runs for weeks on 1kb resolution with whole genome option (-w). It goes t…
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Hi
if can calculate isolation score in boundary by juicer？？？
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I'm trying to run `diff_mustache.py` on two `hic` files with the example command line, and getting the following error:
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The distance limit is set to 2000000bp
Traceback (most recent call last…
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As of Juicer Tools version 1.22, dump expected only prints the first value. Earlier versions print a vector of values.
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I am seeing the following error at the dupcheck phase:
***! Error! The sorted file and dups/no dups files do not add up, or were empty.
Running multiple samples, but only one sample produces this…
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Hi there,
has the structure of Juicer changed? I can no longer see a directory called scripts where everything runs out of.
Thanks,
Ashling
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I discovered vulnerability introduced in PR #152. Check out this code snippet from the middleware:
https://github.com/enoren5/tarot_juicer/blob/550c970ed132df3878a999e06905b7cf8deb8e30/tarot_juicer…
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Hi
I had a problem when I was running juicer box dump from HiC data which contain 180M validpairs.
However, it showed "O/E data not available at chr5 BP_25000 KR", and could not generate results fil…