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The current spec only allows an URL identifier in attachment (contained in a list wrapped with a dictionary), for some cases it would be helpful to allow a dictionary in a list, e.g. for displaying a …
oeway updated
3 years ago
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Hi Prof. Fessler,
I'm trying to implement MIRT image reconstruction into my electron transmission microscopy (TEM), which often resulted in poor resolution.
I have been multiple trials in window…
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## Context
This issue is part of the loader refactoring project to include microscopy data (#304) and to migrate to HDF5 loader (#474).
Following this [comment](https://github.com/ivadomed/ivadome…
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These will be published soon the portal. Ideally there would be a directory schema in place.
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I am working on volumetric light sheet datasets, and I have one fully annotated embryo across 300 time points.
Each time point has from 8 cell to 1200 cells at the end (so no slice ever has more tha…
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As an informatics developer, I would like to better understand the optical physiology sine dewarping python module, so that it will be easier to maintain (easier to bugfix and/or refactor).
Validatio…
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If one has e.g. a stack of microscopy images, rotation around one axis only might be desired.
The interface would be similar to e.g. `Crop`:
```python
import torchio as tio
apply_affine = tio.…
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**Describe the bug**
If I open a localization file sans metadata (e.g. a .csv or .mat), generate a rendering, threshold and label, and then try to pull the labels back into the localizations, I get t…
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There currently isn't any documentation or examples on how to use the the Fluorescence plugin for the PBRT rendering engine. Providing some example code / configurations using a neuron mesh exported f…
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**Is your feature request related to a problem? Please describe.**
Whole slide imaging (WSI) in pathology generates huge images which makes is inefficient to load the whole image into memory and extr…
drbeh updated
3 years ago