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MouseLand
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cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
https://www.cellpose.org/
BSD 3-Clause "New" or "Revised" License
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Nuclear Mask Dilation: follow up to issue #1009
#1066
marsdenl
opened
7 hours ago
0
[FEATURE] Install the API only
#1065
nclement-cytoo
opened
14 hours ago
0
[BUG]Value Error when training Cellpose3
#1064
SelinaHhan
opened
2 days ago
0
Issues with Cellpose on macOS using the MPS Backend
#1063
Vijayishwerj
opened
3 days ago
0
Larger than memory images: performant and scalable distributed implementation for workstations and clusters
#1062
GFleishman
opened
4 days ago
1
[FEATURE] Larger than memory images: performant and scalable distributed implementation for workstations and clusters
#1061
GFleishman
opened
4 days ago
0
[BUG] Drawing masks does not work properly at high ROI counts?
#1060
JannikMen
opened
4 days ago
0
Issue with io.masks_flows_to_seg in notebook example
#1059
VivekJohnSudhakar
opened
5 days ago
0
Add norm percentiles as CLI argument
#1058
TheBestDestroyer
opened
5 days ago
0
two-photon images segmentation
#1057
Hansihh1
opened
5 days ago
0
[BUG] H&E image nucleus segmentation works with v2 but not with v3
#1056
gdurif
opened
6 days ago
3
Made PyTorch version check compatible with post-release versions
#1055
MeyerBender
opened
1 week ago
0
[BUG] Issue when running with post-release version of PyTorch
#1054
MeyerBender
opened
1 week ago
0
Cellpose3 running with Vizgen Post-processing Tool (VPT)
#1053
KunHHE
opened
1 week ago
0
CRITICAL:cellpose.io:ERROR: could not read masks from file, can only convert an array of size 1 to a Python scalar
#1052
jusforwork15
opened
1 week ago
0
Still having drawing bug where masks wont actually be created once drawn
#1051
mayishazn
opened
1 week ago
7
[FEATURE] calibrate diameter with command line
#1050
jazberna1
opened
1 week ago
0
Issue1038 Index error bugfix using tensor dimension checks, reshaping of tensor dimensions prevents out-of-range errors as well as additional dynamics.py performance optimizations
#1049
derekthirstrup
opened
2 weeks ago
2
Cell pose graph from plot.show_segmentation
#1048
antopHU
opened
2 weeks ago
0
Apply image restoration sequentially before segmentation
#1047
Feanor007
closed
2 weeks ago
4
RuntimeError: nonzero is not supported for tensors with more than INT_MAX elements
#1046
Lem-P
opened
2 weeks ago
2
[Doc] Describe how to manage multithreading
#1045
royjacobson
opened
2 weeks ago
1
Update README.md
#1044
JLU-WangXu
opened
2 weeks ago
0
segmentation of nuclei + membranes
#1043
Kaltzisp
opened
2 weeks ago
0
[BUG] Minor: Ensure to use weights_only=True for all torch.load
#1042
ashishUthama
opened
2 weeks ago
0
[BUG] normalisation problem?
#1041
TomPJWyatt
opened
3 weeks ago
0
File selection cancel logic added
#1040
knowblesse
opened
3 weeks ago
1
[INSTALL] How to train the model on another annotated dataset (transfer learning)
#1039
AyaMohamedS
opened
3 weeks ago
0
[BUG] Crashing during headless processing a folder of 3D z stacks
#1038
derekthirstrup
opened
3 weeks ago
4
[BUG] Error saving flows and cellprob tif image
#1037
derekthirstrup
opened
3 weeks ago
1
New 3D mode
#1036
mwshinn
closed
3 weeks ago
3
Using Cellpose for IMC data
#1035
antopHU
closed
3 weeks ago
2
[BUG] Cellpose 3 using GPU macOS M1
#1034
AlabC
opened
3 weeks ago
9
[BUG] Cellpose training returns no masks after successful training
#1033
eschbachj
closed
3 weeks ago
7
[INSTALL] error
#1032
marywhitman
closed
3 weeks ago
2
Ian coccimiglio gui radam
#1031
carsen-stringer
closed
1 month ago
0
New3d
#1030
carsen-stringer
closed
1 month ago
0
[Question] Change in cellpix id when reloaded
#1029
knowblesse
closed
1 month ago
1
[BUG]
#1028
LukasOldenburg
closed
1 month ago
1
Can Cellpose be used to segment cell in the HE-stained images ?
#1027
februaryfang
closed
2 weeks ago
3
[BUG] Different Segementation Result between GUI and Python command
#1026
HaofeiGe
opened
1 month ago
3
[BUG] Fail to download "older" models
#1025
romainGuiet
closed
1 month ago
1
[INSTALL]Install cyto3 in TrackMate-Cellpose
#1024
sparkefish
closed
1 month ago
1
[FEATURE] Output cell probability from CLI
#1023
cam-nowell
opened
1 month ago
0
GUI selection for SGD/RAdam Training
#1022
ian-coccimiglio
closed
1 month ago
0
[BUG] demo_images Website out of service
#1021
jkjkiiiii
closed
1 month ago
1
[BUG] Z-axis disagreement for stacks taller than they are X or Y
#1020
outofculture
closed
1 month ago
1
FEATURE: ctrl-c/v to copy the selected mask into the current layer
#1019
outofculture
opened
2 months ago
1
do not attempt to merge masks when nothing is selected
#1018
outofculture
opened
2 months ago
0
[BUG] No masks found during training
#1017
nicolehmr
opened
2 months ago
1
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