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MouseLand
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cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
https://www.cellpose.org/
BSD 3-Clause "New" or "Revised" License
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Allow for cell and nucleus detection
#914
lacan
opened
2 months ago
0
ValueError when exporting masks to ImageJ ROIs [BUG]
#913
LenaGschossmann
opened
2 months ago
0
[INSTALL]Can cellpose3.0 be installed on windows?
#912
Evexyn
closed
2 months ago
1
significantly different counts form cyto-2 to cyto-3
#911
tanpancodes
closed
2 months ago
1
branch with updates for neurips challenge
#910
carsen-stringer
closed
2 months ago
0
How to specify device on A100 that is MIGed[INSTALL]
#909
derekthirstrup
opened
2 months ago
1
Cellpose keeps trying to download models[BUG]
#908
Boehmin
closed
2 months ago
1
Error in starting GUI Interface for Cellpose
#907
Shrishtee-kandoi
opened
2 months ago
1
Add description of new features to README
#906
Baschdl
closed
2 months ago
0
[BUG]
#905
jinshachen
opened
3 months ago
3
io.masks_flows_to_seg errors silently without saving seg npy file [BUG]
#904
davidhbrann
closed
1 month ago
3
AttributeError during training [BUG]
#903
redrodion
opened
3 months ago
0
Cellpose model site down?
#902
Nina-ICCE
closed
2 months ago
3
AttributeError: 'CellposeModel' object has no attribute 'diam_labels'[BUG]
#901
VerbeekM
opened
3 months ago
2
[BUG] finetuned nuclei model has a model diam_mean of 30 instead of 17
#900
PolarBean
opened
3 months ago
1
GPU not being used by Cellpose
#899
ismaelfhz
opened
3 months ago
2
Using --no_norm with CLI slows down 3D segmentation[BUG]
#898
derekthirstrup
opened
3 months ago
0
Development
#897
onurserce
closed
3 months ago
0
pyqtgraph added into environment.yml
#896
onurserce
closed
2 months ago
0
[INSTALL] pip upgrade form cellpose 2 to cellpose 3 results in segmentation fault
#895
amichaut
opened
3 months ago
0
Save Files as *.npy output from Jupyter Notebook not generated
#894
JT-24
closed
1 month ago
4
[BUG]Percentile normalization when norm3d=True
#893
derekthirstrup
opened
3 months ago
1
add venv instructions to README.md
#892
mrariden
closed
1 month ago
1
[BUG] Loading cyto3-model throws error due to non-existing url for size model
#891
bevoorrading
closed
3 months ago
2
[BUG] Overlapping ROI with finetuned Cellpose
#890
postnubilaphoebus
closed
3 months ago
5
[BUG] Cellpose hogging the CPU during multi-threading
#889
BennyGinger
closed
3 months ago
1
Two style vector normalizations
#888
Soroush-aali-bagi
opened
3 months ago
0
[BUG]: Outliers in cell segmentation points (both for ['mask'] and ['outlines'])
#887
postnubilaphoebus
opened
3 months ago
0
[INSTALL] Mac M1-M3 support Cellpose v3
#886
erikgerdtsson
opened
3 months ago
4
[BUG] - Unable to train custom model in cellpose3
#885
ABCarvalho
opened
3 months ago
2
Add option not to fill masks. Compression to TIFF files.
#884
hey2homie
opened
3 months ago
5
[BUG] No controls for Z slice position in latest GUI
#883
msymeonides
closed
3 months ago
7
[BUG] GUI had problems reporting "AttributeError: 'MainW' object has no attribute 'stack_filtered'"
#882
xuanjiang102
closed
3 months ago
2
Add .flex to the allowed image file extensions
#881
mmasinas
opened
3 months ago
0
[BUG] Internal Server Error Cellpose.org
#880
CathyMHC
closed
4 months ago
1
Can't load previously generated *_seg.npy files or navigate to other images in same folder [BUG]
#879
ajmack-utah
closed
3 months ago
1
upper and lower LUT sliders completely overlap[BUG]
#878
derekthirstrup
closed
3 months ago
3
Align for multi fov result combined
#877
ustc-fmh
opened
4 months ago
0
updating docs and readme
#876
carsen-stringer
closed
4 months ago
0
adding CLI for restore
#875
carsen-stringer
closed
4 months ago
1
Run cellpose on many pictures
#874
felixlouchez
closed
3 months ago
2
Install on M1 silicon error first time[BUG]
#873
seanitracy
opened
4 months ago
0
[BUG] Google Collab notebook - no attribute 'train'
#872
superwormz
closed
4 months ago
2
[BUG] Error on downloading `cyto2_cp3` model
#871
ElpadoCan
closed
4 months ago
2
[BUG] `IndexError` when running cyto3 from the GUI for 3D Segmentation with GPU
#870
zoccoler
closed
4 months ago
5
[BUG] training with all channels, augment and RGB images leads to incorrect nchan
#869
josegcpa
closed
4 months ago
1
How to get and convert pixel cell probability to object cell probability?
#868
marcelopedras
closed
4 months ago
3
3D segmentation not working with the GUI
#867
bpavie
closed
4 months ago
11
[FEATURE]Training in 3D - How to process 2D trainings data?
#866
klingann
opened
4 months ago
3
[BUG] Inconsistency between Cellpose.eval() and CellposeModel.eval() and image input format
#865
pakiessling
closed
4 months ago
7
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