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EFO modifies the CL term `acinar cell` (`CL:0000622`) to make it a subclass of `located_in some pancreas` (where `pancreas` comes from Uberon, `UBERON:0001264`).
While it seems common to use “acina…
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We would like to be able to use anatomy terms from the Zebrafish Anatomy Ontology (ZFA) when making zebrafish annotations.
Could you please add the Zebrafish Anatomy Ontology (ZFA) to Noctua?
ZF…
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Thank you for your paper and code. I'm wondering which script to run to replicate the paper results with the proposed method? I ran train_ST_3D_VNet.py and achieved the baseline results (e.g., Dice of…
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Hello, I have a single cell dataset about differentiation from stem cells to mulitple lineage cells. I can't find ideal cell type in Mouse Cell Alta, however. I'd like to ask if I can use the terminal…
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First off, cool package! I've noticed that when I supply categorical arrays to "color_by" I still end up with a continuous color bar in my figure. I'm using pymde version 0.1.2 with python 3.9.7, pand…
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**Describe the bug**
The DICOMSegmentationWriterOperator fails with a specific input DICOM Series, when this operator
is included in the UNETR segmentation sample app with a DICOM series converted …
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**Publication:**
Single-Cell Mass Cytometry Analysis of the Human Endocrine Pancreas
**Priority:**
2
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Hey, I always use this package to download seqdata from TCGA and it always worked, but I am getting an error for the first time with TCGA-PAAD (pancreas)
This is my code:
```
#Searching TCGA-PA…
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Hi, @FabianIsensee
I installed nnUNet in a python virtual environment in windows. Now, I am trying to do prediction with Kits19 pretrained model using the following command:
nnUNet_predict -i $nn…
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When i use this tutorial (https://satijalab.org/signac/articles/integrate_atac.html) , i found i could not map my data to a integrated reference. My reference single-cell data have some batches, i wan…