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We would like to be able to use anatomy terms from the Zebrafish Anatomy Ontology (ZFA) when making zebrafish annotations.
Could you please add the Zebrafish Anatomy Ontology (ZFA) to Noctua?
ZF…
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HDF5-DIAG: Error detected in HDF5 (1.10.6) thread 0:
#000: /tmp/SimpleITK-build/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5F.c line 370 in itk_H5Fis_hdf5(): unable open file
major: File acc…
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Hello, I have a single cell dataset about differentiation from stem cells to mulitple lineage cells. I can't find ideal cell type in Mouse Cell Alta, however. I'd like to ask if I can use the terminal…
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Thank you for your paper and code. I'm wondering which script to run to replicate the paper results with the proposed method? I ran train_ST_3D_VNet.py and achieved the baseline results (e.g., Dice of…
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**Publication:**
Single-Cell Mass Cytometry Analysis of the Human Endocrine Pancreas
**Priority:**
2
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First off, cool package! I've noticed that when I supply categorical arrays to "color_by" I still end up with a continuous color bar in my figure. I'm using pymde version 0.1.2 with python 3.9.7, pand…
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Hey, I always use this package to download seqdata from TCGA and it always worked, but I am getting an error for the first time with TCGA-PAAD (pancreas)
This is my code:
```
#Searching TCGA-PA…
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**Describe the bug**
The DICOMSegmentationWriterOperator fails with a specific input DICOM Series, when this operator
is included in the UNETR segmentation sample app with a DICOM series converted …
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Hi, @FabianIsensee
I installed nnUNet in a python virtual environment in windows. Now, I am trying to do prediction with Kits19 pretrained model using the following command:
nnUNet_predict -i $nn…
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[Codelist, here.](https://www.opencodelists.org/codelist/user/CuttingJ/surgical-exclusions-for-covidsurg-abdominal-surgery/48c7f85f/)
Surgical exclusions 'Colon, rectum and small bowel: Includes ap…