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Thank you for your paper and code. I'm wondering which script to run to replicate the paper results with the proposed method? I ran train_ST_3D_VNet.py and achieved the baseline results (e.g., Dice of…
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**Publication:**
Single-Cell Mass Cytometry Analysis of the Human Endocrine Pancreas
**Priority:**
2
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First off, cool package! I've noticed that when I supply categorical arrays to "color_by" I still end up with a continuous color bar in my figure. I'm using pymde version 0.1.2 with python 3.9.7, pand…
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Hey, I always use this package to download seqdata from TCGA and it always worked, but I am getting an error for the first time with TCGA-PAAD (pancreas)
This is my code:
```
#Searching TCGA-PA…
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**Describe the bug**
The DICOMSegmentationWriterOperator fails with a specific input DICOM Series, when this operator
is included in the UNETR segmentation sample app with a DICOM series converted …
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[Codelist, here.](https://www.opencodelists.org/codelist/user/CuttingJ/surgical-exclusions-for-covidsurg-abdominal-surgery/48c7f85f/)
Surgical exclusions 'Colon, rectum and small bowel: Includes ap…
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Hi, @FabianIsensee
I installed nnUNet in a python virtual environment in windows. Now, I am trying to do prediction with Kits19 pretrained model using the following command:
nnUNet_predict -i $nn…
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When i use this tutorial (https://satijalab.org/signac/articles/integrate_atac.html) , i found i could not map my data to a integrated reference. My reference single-cell data have some batches, i wan…
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https://mp.weixin.qq.com/s/HVdEpIifjkiL_pxDKMchMg
ixxmu updated
2 years ago
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I am running the GRN inference step but getting the FileNotFoundError: [Errno 2]. it is not clear that which file is not found.
Please help.
I have installed all the required packages using pip
…