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The WEC Design Response Toolbox (WDRT) is an OpenSource python code hosted on GitHub ([code](https://github.com/WEC-Sim/WDRT), [docs](https://wec-sim.github.io/WDRT/index.html)). Some internal discuss…
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Deprecate bits of code that don't do things the workflow way, or just don't use it. They can be updated to do it the right way (so they can be wrapped by `iterable_loop` (soon to be `autoparallelize`…
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This is one of the multivariate methods mentioned in WMO 100. We already have the others, namely correlations, PCA, Canonical correlations, so this is the one tool missing.
It fits well, in that w…
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Here's a partial list of nice-to-have features for GeoMxTools
NGS readout normalization functions:
- [x] Scale to a user-selected quantile of the data
- [x] Subtract background from a data matrix…
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I am trying your vingette with a Seurat object which is scRNA + scATAC combined. But I get the following error message when I run PairCells(). My scMEGA part of my code is below:
coembed.sub
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https://mp.weixin.qq.com/s/ThmItwx5kpjYCfBbHWi1DQ
ixxmu updated
2 years ago
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https://mp.weixin.qq.com/s/-JPf2M67ZdUXIaFbxl6VFQ
ixxmu updated
2 years ago
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This looks like a comprehensive workflow. I'd like to use it to do DE analysis and variant calling for other species, like non-human malaria. What would I need to do to make that happen?
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Hello,
Finally 10X Genomics has given a code for analysis of CELL Plex (CMO) in Seurat.
The code is written in https://www.10xgenomics.com/cn/resources/analysis-guides/tag-assignment-of-10x-Genomics…
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I would like to color the umap representation using gene expression values. For ease of use I'd like to display the Gene name instead of gene_id which are the adata.var_names in my case. Setting `gene…