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Nanostring-Biostats
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GeomxTools
Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.
MIT License
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Update readNanoStringGeoMxSet.Rd
#201
efreckmann
closed
2 weeks ago
1
Update coercions.R
#200
efreckmann
closed
2 weeks ago
0
Issue reading .dcc files into R
#199
ava-amidei
opened
1 month ago
1
Error running aggregateCount
#198
jonoave
opened
2 months ago
1
Merge two (or more) GeoMxSet objects
#197
shaniAmare
opened
5 months ago
1
QC questions
#196
slzhao
opened
5 months ago
1
Bioc3.19 small bug fixes
#195
maddygriz
closed
6 months ago
2
It seems that mixedModelDE function code uses different "elt" data for single or multicore. Is that correct?
#194
Flope
closed
7 months ago
1
bioc 3.19 merge
#193
maddygriz
closed
7 months ago
2
Bioc3.19
#192
maddygriz
closed
8 months ago
6
Error coercing GeoMx data to Seurat object
#191
generalshermanw
opened
11 months ago
6
Prepare for upcoming Seurat v5 release
#190
Gesmira
opened
1 year ago
0
mixedModelDE failed to converage
#189
ydai3
opened
1 year ago
1
Error in readNanoStringGeoMxSet() arguments imply differing number of rows
#188
emilylasse
closed
1 year ago
2
mixedModelDE gives "object <groupVar> not found" error when replicating vignette.
#187
joshscurll
closed
1 year ago
1
create a data object using the readNanoStringGeoMxSet function
#186
giorgiaguerra12
closed
1 year ago
1
Handle older assay IDs
#185
andrewrech
opened
1 year ago
5
bioc 3.17 merge
#184
maddygriz
closed
7 months ago
1
Combining experiments
#183
Pointillomic
closed
1 year ago
2
mixedModelDE does not work with a continuous predictor
#182
lardenoije
opened
1 year ago
2
LabWorksheet pre-processing unclear
#181
mgrout81
opened
1 year ago
0
Nayana machine learning
#180
nyeshlur
opened
2 years ago
0
Nayana machine learning
#179
nyeshlur
closed
2 years ago
0
Area filtering
#178
maddygriz
closed
1 year ago
3
The differences of QC parameter between Rpackage and GeoMx DSP software
#177
thecatgonewithwid
closed
1 year ago
1
error using as.Seurat
#176
yupingz
closed
1 year ago
3
labworksheet read in
#175
maddygriz
opened
2 years ago
0
Error when running mixedModelDE
#174
Flope
closed
2 years ago
2
Number of nuclei
#173
ClaudiaZagami
closed
2 years ago
1
Error readNanoStringGeoMxSet
#172
ccruizm
closed
2 years ago
3
bug in setSegmentQCFlags() minArea filtering
#171
fnew
closed
1 year ago
2
error checking with proteogenomics data
#170
maddygriz
opened
2 years ago
1
Documentation updates 3.16
#169
NicoleEO
opened
2 years ago
0
Fix link in release
#168
NicoleEO
closed
2 years ago
0
Update news
#167
NicoleEO
closed
2 years ago
0
SOO link
#166
maddygriz
closed
2 years ago
0
Issue with DCC files.
#165
ClaudiaZagami
closed
2 years ago
8
Merge dev
#164
NicoleEO
closed
2 years ago
0
Iss130 doc
#163
NicoleEO
closed
2 years ago
0
decrease test & example time
#162
maddygriz
closed
2 years ago
1
as.Seurat documentation
#161
maddygriz
closed
2 years ago
0
Bioc 3.15 Checks
#160
NicoleEO
closed
2 years ago
1
Doubts on the package Vignette and QC for Nanostring DSP WTA
#159
alberto-valdeolivas
closed
2 years ago
1
bump version
#158
maddygriz
closed
2 years ago
0
S3 coercions
#157
maddygriz
closed
2 years ago
1
Reqs&specs and version coercion
#156
maddygriz
closed
2 years ago
0
Update object
#155
maddygriz
closed
2 years ago
1
Reqs and specs
#154
maddygriz
closed
2 years ago
1
Recheck workflow runs with latest package version
#153
NicoleEO
closed
2 years ago
0
grubbs test
#152
maddygriz
closed
2 years ago
1
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