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Apologies for the somewhat all-encompassing ticket, not sure where the best place is.
We have two similar problems
1. We would like to see visually informative diffs between ontology releases, …
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Email submitted to IAO issue tracker by Chris Mungall:
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I think the defined-class vs universal dichotomy is confusing on
multiple different l…
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The ordering of frequency information regarding phenotypes is not clear. It might be documented somewhere, but it is not clear where.
For example, how are "hallmark", "typical", "frequent" and "occas…
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BRCA1 is associated with OMIM:604370 (BREAST-OVARIAN CANCER). However, that OMIM term is not longer mapped to any Disease Ontology term - it was previously mapped to 'hereditary breast ovarian cancer'…
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Curator interfaces (eventually) need a nice way of looking up terms by name or id in one of several ontologies. With a system for inputting multiple terms.
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Currently, the API has a single endpoint: `.../match`. I propose adding a new, public, endpoint, e.g. `.../status` whereby each system reports the status and configuration of that endpoint. I think th…
buske updated
6 years ago
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There are 2. options:
1. We add the ontology terms and their relationships to the database. This has to be done only once. Phenotypes from AraPheno already contain the ontology term, so we would j…
timeu updated
7 years ago
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I merged two strain characteristic terms:
DDSTRAINCHAR:0000018 was merged with DDSTRAINCHAR:0000011, the latter is the primary term.
1) in the current dictybase the file is still called 'strain_ch…
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I was trying to find out how to relate for example signs with their
disease. My use case is being able to say for example "generalized motor
manifestation is a sign of seizure".
There will of cou…
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This is all I want:
New QUERY PAGE (with additional fields when required for relations conditions, allele type etc)
![new_query](https://cloud.githubusercontent.com/assets/7359272/20712614/cb5cf…