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Bounding box query ignores 3D points. The code was supposed to work also in this case, fix the bug and add tests.
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I get a write error:
`Above error raised while writing key 0 of from /.`
if a name of the index to the var table is an int. Setting the name to a string fixes this.
_Originally posted by @jeffh…
zznx updated
8 months ago
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Is this expected?
![Screenshot 2023-09-20 at 10 52 50 …
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### What kind of feature would you like to request?
Additional function parameters / changed functionality / changed defaults?
### Please describe your wishes
```
/home/zeth/miniconda3/envs/pert…
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## Description
Using `AnnData._inplace_subset_var`, entries in `.uns` are deleted if
1. There is a categorical column (let's say `"col_1"`)
2. `.uns` has the key `"col_1_colors"` and the corres…
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Dear,
Now users can analyze and explore multi-modal data with Seurat, are there any equivalent methods in Scanpy ? Cellranger3 adds some new features and now supports multi-modal data too.
Using S…
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The following snippet demonstrates the issue:
```py
import anndata as ad
import scanpy as sc
import numpy as np
import pandas as pd
adata = ad.AnnData(X=np.ones((2, 2)), dtype=np.float64)
ada…
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Hello,
I am going through your tutorials and I have one question regarding the 'Use landmark annotations to align multiple omics layers' one. I want to filter the visium breast cancer data by the '…
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of anndata.
- [ ] (optio…
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I'm trying to figure out how to retain categorical values when subsetting an anndata object.
The issue im having is as follows:
When I create an anndata object, I can assign a categorical variable…