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Hi,
I want to use `MCPcounter` to infer other immunce cell subpopulations not included by `MCPcounter`. Can I add other markers to the current signature gene list?
Yiwei Niu
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What would cause clusterCellFrequencies to return NULL? Does this imply that there is only one SP?
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I just started using Monocle and am going through all the basic commands. I am trying to understand `clusterCells()` output.
The first issue is easy. The `num_clusters` parameter seems to generate …
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Is there a way to give the user some more info?
Simple example:
```
rm(list = ls())
library("AER")
devtools::load_all("../IVMTE/")
set.seed(5239348)
n
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Hi Bo,
I am trying to simulate a population of fishers that split at T=1 (original population = 1000; T=1 sub-populations= 72, 928). I am additionally trying to simulate age-structuring as well in th…
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Annotations to 'GO:0052157 modulation by symbiont of microbe-associated molecular pattern-induced host innate immune response' are to gene products that get recognized by the host. This is not an acti…
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Nice work with malva. I tried this on several R1 FASTQs of paired-end 150x2 whole-genome sequencing datasets, and end up with empty VCFs in all cases. Can you help debug? Here are the commands used:
…
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Hi,
Thank you for providing the community a great single cell analysis tool. I am attempting to integrate two datasets with batch effect in Seurat v3 for evaluation purpose, following default confi…
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Implement a method to combine models (mixture model).
It should carry forward into simulation, where samples are distributed across models based on the individual probability of belonging to populati…
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Hi @mikejiang & @jacobpwagner ,
Not sure if this is the best place to post this issue. It looks like there are issues gating empty populations with the latest `cytolib`, `flowWorkspace` and `openC…