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I have some samples which have multiple sets of paired FASTQ files from different sequencing runs. Is it possible to set up an input FOFN so they can be automatically combined by Bactopia?
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Advanced search: Search for all changes in a given year. It would be great to find all taxonomic changes in 2014 for example.
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add taxonomic levels higher than family to the filter panel on the left side. An example where this is useful: when searching for a species name (excluding genus which often changes) and then filterin…
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Continued from #48 - if a change is URIs is under consideration then I want to make the case for OBO-style URIs, or some other meaning-free-identifier scheme, e.g. UUIDs or URIs with incrementally ass…
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Hello,
I'm trying to use HGTector on a terminal and wasn't able to run the sample folder. Here's the error message I got:
Step 1: Searcher - batch protein sequence homology search.
This Perl not bui…
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For new term requests, please provide the following information:
## Preferred term label
taxon as collection of organisms
## Synonyms
taxon
## Textual definition
A collection of orga…
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For official lessons, we had developed a spreadsheet and some general guidelines for GitHub topics to use:
- https://github.com/carpentries/maintainer-RFCs/issues/5
- [GitHub topics spreadsheet](…
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Submitting Author: Austin Koontz (@akoontz11 )
Repository: https://github.com/pearselab/SymbiotaR2
Version submitted: 0.0.1
Editor: @noamross
Reviewers: @bpbond, @sckott
Due date for @bpbond: 2…
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Hi @qdread ,
I was working through Arya's example for ostats_regional in the vignette, but didn't feel as if the regional pool was specified correctly (i.e., it uses all years and sites). I wrote s…
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This is one example of many, where a change in higher taxon results in all new keys being issued to sub-taxa.
Is this expected?
To find other examples, select the "genusKey" changed in the "chan…