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@Bernadetadad, I'm going to start making some nice VitePress documentation for the pipeline with key plots. Let me know if there is anything specific you think this should include.
One thing I was …
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Hi there,
Thanks for the package.
When I used `run.flowsom` even with `meta.k=20` (automatic `meta.k` resolved 11 clusters), the cluster UMAP doesn't look "right" -- they clumped together on 1…
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Restyle the AVR UI to have the look and feel more like the [Data Portal](https://portal.hubmapconsortium.org) and the [Ingest Portal](https://ingest.hubmapconsortium.org)
Including, but not limited…
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Hello,
I hope this is the right place to work through the virulence phenotypes for Cryptococcus and model them in the OMP. Virulence and anatomical structure formation are likely the most complex phen…
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This was raised by @PeteHaitch on Slack.
Currently when we create a SPE object containing multiple Visium samples with `read10xVisium()`, the column names (barcode IDs) are repeated, since 10x Geno…
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New term request C-terminal of phosphate-regulating hormone high in blood (elthat_180527094611): Fibroblast growth factor 23; FGF23 UMLS: 1968909
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I tried to put `zsh` or `oh-my-zsh` in the config file to exclude it from upgrade.
## What did you expect to happen?
Zsh not to be upgraded
## What actually happened?
Command failed with…
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Add an outer and inner entity type called `antibody` using the table of the same name. Index that table's `target` column into a property of the same name in inner and outer entities of type `antibod…
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New term request Anti-NR2A antibodies (segal_080910193223): N-methyl-d-aspartate receptor subunit 2A; NMDA
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New term request Anti-VZV IgG antibodies in CSF (jadhav_091112201914): Cerebrospinal fluid; varicella zoster virus