davidpng FCS_Database issues

davidpng / FCS_Database

Program to scrape an FCS directory of metadata

GNU General Public License v3.0

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issues

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Add bioconductor install to building scripts

#69 hermands opened 9 years ago
0
When get updated HPdb, then remove "Cases table" and link TubeCases to HPdb

#68 hermands opened 9 years ago
0
Patient record matching

#67 hermands opened 9 years ago
0
Add query random order

#66 hermands closed 9 years ago
0
Validating auto-singlets

#65 davidpng opened 9 years ago
1
[low priority] Why are samples failings stats extraction?

#64 hermands opened 9 years ago
2
Par stats

#63 davidpng closed 9 years ago
4
Handle gates

#62 hermands closed 9 years ago
1
updated loadFCS to handle fluorphore names with spaces #59

#61 davidpng closed 9 years ago
0
Singlet gate is dropping a lot

#60 hermands opened 9 years ago
0
Clean up tube types [moderate priority]

#59 hermands opened 9 years ago
0
Fix top-level help [low priority]

#58 hermands opened 9 years ago
0
Turn on saturation gate

#57 hermands opened 9 years ago
1
Handle PmtTubeCases != 15 rows

#56 davidpng opened 9 years ago
0
Profile stats extraction

#55 hermands closed 9 years ago
1
Handle meta db push exceptions

#54 hermands closed 9 years ago
2
Paralellize stat generation

#53 hermands closed 9 years ago
1
Improve QC visualization and aggregation

#52 hermands opened 9 years ago
0
Add tests explicitly for more than one sample

#51 hermands opened 9 years ago
0
make_features exception --?empty FCS handling?

#50 hermands closed 9 years ago
3
Add hdf5 meta info

#49 hermands closed 9 years ago
1
Build make ml input

#48 hermands closed 9 years ago
0
Case_tube_idx change

#47 hermands closed 9 years ago
1
make_ML_HDF5

#46 hermands opened 9 years ago
9
Need subcommand db_make_annotations

#45 hermands opened 9 years ago
1
Handle failed feature extraction

#44 hermands closed 9 years ago
1
Add clinical data

#43 hermands opened 9 years ago
0
Change generation of case_tube_idx

#42 hermands closed 9 years ago
1
Export temp data

#41 hermands closed 9 years ago
1
Raw .fcs data

#40 hermands opened 9 years ago
7
Remove .fcs files from repository

#39 hermands opened 9 years ago
1
Speed up db other_case deletion

#38 hermands closed 9 years ago
1
Switch from TubeCase empty (Yes, No) -> flag (GOOD, empty, feat_extr_fail) ?

#37 hermands closed 9 years ago
1
Add cytnum to query logic

#36 hermands closed 9 years ago
1
#34 One tube extract

#35 davidpng closed 9 years ago
1
Divide by zero error in feature_extraction: len(coordinates)

#34 hermands closed 9 years ago
4
Do we want HDF5/h5py to be parrallelable?

#33 hermands closed 9 years ago
1
Feat extration

#32 davidpng closed 9 years ago
3
Io dev 3

#31 hermands closed 9 years ago
0
Added loadFCS error message capturing

#30 hermands closed 9 years ago
0
Need to capture in TubeCases table a "reason" for being 'empty'

#29 hermands closed 9 years ago
5
Build feature extraction [binning] and feature data I/O [HDF5]

#28 hermands closed 9 years ago
5
Io dev 2

#27 hermands closed 9 years ago
7
Updated Testing to read pickled clean data

#26 davidpng closed 9 years ago
1
Updated HistoStats to make compenstation measurement and added tests for...

#25 davidpng closed 9 years ago
0
Io dev

#24 hermands closed 9 years ago
0
Viz dev 06

#23 hermands closed 9 years ago
4
Need to encrypt .fcs files

#22 hermands closed 9 years ago
1
Need to migrate over to bitbucket>uwlabmed

#21 hermands opened 9 years ago
4
Handling duplicated case_tubes

#20 davidpng closed 9 years ago
1