-
I will create a test script (along with profile and contigs db with a collection) and share with you Meren.
-
anvi-self-test disagrees with setup.py:
```
% anvi-self-test
Your active Python major version ('2') is not compatible with what anvi'o expects :/ We recently switched to Python 3.
```
but
…
-
Dear anvio team,
I noticed a bug after calling anvi-summarize. In the resulting static .html, under "Summary" there are links given to the summary as tab-delimited file and and the number of reads ma…
-
It seems that if you put the NCBI cogs directory anyhere but where Anvio thinks it should be, you must always remember to add arguments telling anvio where it is. Instead of requiring this extra step …
ghost updated
7 years ago
-
We are trying to view contig bins in anvio with "-C CONCOCT", but getting this message:
```
(/slipstream/home/bethanie/.conda/envs/anvio) bethanie@moleculardb:~/anvio_June14_2017$ anvi-interactive…
-
Installation on OSX El Capitan (10.11.6) via Homebrew completes without error, however attempting to run `anvi-self-test` or any other anvi'o command fails with `ModuleNotFoundError: No module named '…
-
In my fork, linting of a new recipe I added (monovar) fails, but only cites unrelated recipes:
```
failed_tests
recipe …
-
Could you add these flags, found in the hmm export function, to export pc alignments as well?
```
--max-num-genes-missing-from-bin INTEGER
This filter removes bins (or g…
-
I tried running `anvi-gen-genomes-storage` on two phage genomes that have no hmm hits. And I got the following error:
```
Running command: anvi-gen-genomes-storage -e external_genomes.txt -o phage-G…
-
I tried to install anvio on a Linux centos system.
I downloaded the latest version of anaconda Anaconda3-4.4.0-Linux-x86_64.sh
and then ran
conda create -n anvio232 -c bioconda -c conda-forge gs…