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Hello ArchR folks!
The function subsetArchRProject copies all the folders and files from the main ArchR project folder to the new subset one. This to me seems unnecessary as you often don't need ma…
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Good day,
I am having issues filtering the doublets after the score. Once `addDoubletScores` complete the scoring successfully, then I want to `filterDoublets` but get the next error:
```
Registe…
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Hello,
I am having issues with the addMotifAnnotations function in section 12.1. I have tried running it on the sample dataset as well as my dataset, but I'm getting the same error. See below:
s…
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Can I forego running addPeak2GeneLinks() function for the 10X Multiomic assay?
> proj5
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Problem encountered when running scripts from Chapter15.4.2 Step 2. Identify Correlated TF Motifs and TF Gene Score/Expression on Multiomic ATAC+GEX data.
Screen shot or error:
ArchR Log:…
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**Attach your log file**
[ArchR-createArrows-2297bbfbc3ce-Date-2021-03-08_Time-15-58-25.log](https://github.com/GreenleafLab/ArchR/files/6099870/ArchR-createArrows-2297bbfbc3ce-Date-2021-03-08_Time…
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Hi ArchR team,
Thank you for putting together such an awesome program!! When making heat maps of motif enrichments, is there any way to manually set/change the order of the rows (which correspond t…
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Hi Developers,
Thanks for the great package. It is very smooth and versatile.
One thing I found is that I don't know how to modify the matrix generated by ArchR and store it back in the project …
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Hi @rcorces ,
I have a question about using ArchR outputs for downstream analysis. I would like to detect potential motif binding sites within peaks. Obviously, I can use bedtools to intersect moti…
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I am projecting a RangeSummarizedExperiment of bulk ATAC-seq onto the snATAC-seq project. Running with `threads=1` or with automatic detection gets two similar errors in one of the calls somewhere.
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badoi updated
3 years ago