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### Description of the issue:
@BenjaSanchez I found 5 duplicated reactions. They are the same but written in the opposite direction.
1) 'r_2115' 'r_0163'
'1 s_0359[c] + 1 s_0794[c] + 1 s_1203[c]…
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Currently the complete Bigg annotation for all available reactons and metabolites is downloaded every time the model is updated. It would be much more useful to store are downloaded data locally in a …
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Metabolites and genes are easier to update or add annotation as reactions because they show little redundancy (i.e. every metabolite is chemically unique in Bigg). Reactions in Bigg instead are often …
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Hi,
I am trying to re-run the memote meta analysis you so kindly and reproducibly shared.
However, when I run `make plots` on the cluster I run into problems with the docker commands:
```
$ m…
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I've downloaded a model (in xml) made by others, metabolites are in SEED ID (eg. dATP is id="M_cpd00115_c0" name="dATP[c0]"),
Is there a way I can convert these IDs into "datp_c" style that is …
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I imported this to my project with
```cmake
add_subdirectory(bgfx.cmake)
```
And I'm getting this when trying to build:
```
11>image.cpp
11>D:\Nikos\Programming\cpp\pctation\external\bgfx.cmake…
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Please make sure your issue complies with these guidelines:
- * [ ] Server Software must be the official PMMP w/o vanilla patching plugins (i.e. TeaSpoon)
- * [ ] Issue must have not been reported…
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For some longer gene reaction rules parsing fails.
Could not find a pattern yet, except that in most cases a fbc.AND is tried to be interpreted as fbc.GeneProductRef.
Needs some additional investig…
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### Description of the issue:
While I was checking the reactions with a confidence score lower than `3`, I've found that some of the reactions with KEGG ID's are not the same as shown in KEGG Reactio…
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Dear Daniel,
Running `build_universe --thermo` requires KeggModel class from component_contribution.kegg_model, but component-contribution python package doesn't seem to implement KeggModel (actually…