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SysBioChalmers
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yeast-GEM
The consensus GEM for Saccharomyces cerevisiae
http://sysbiochalmers.github.io/yeast-GEM/
Creative Commons Attribution 4.0 International
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implement auxotrophy-based curation
#371
edkerk
opened
2 weeks ago
0
non-working BioStudies URL in yeast9 paper
#370
egonw
opened
1 month ago
1
yeast 9.0.1
#369
edkerk
closed
1 month ago
0
chore: update citation
#368
mihai-sysbio
closed
1 month ago
0
Yeast-GEM visualization?
#367
forxhunter
opened
2 months ago
3
Hardware suggestion
#366
Danyang95
closed
1 month ago
1
Add mets concentration from ymdb
#364
cheng-yu-zhang
closed
4 months ago
1
yeast 9.0.0
#361
edkerk
closed
10 months ago
0
fix: unbalanced reactions and incorrect metFormulas
#360
edkerk
closed
10 months ago
0
reactions r_0533, r_0534, r_0535 appear not balanced
#358
charamon
closed
10 months ago
2
fix: make standard-gem.md a hidden file
#357
mihai-sysbio
closed
11 months ago
0
yeast 8.7.1
#356
edkerk
closed
11 months ago
2
fix: reaction name r_1024
#355
edkerk
closed
11 months ago
0
bug:spelling error for r_1024 "enxyme"
#354
BjornFJohansson
closed
11 months ago
2
feat: function to report if flux vector is ΔG-compatible
#353
edkerk
opened
1 year ago
0
Proposed changes to the anaerobic model
#352
davidhcsic
opened
1 year ago
2
fix: failing workflows
#350
mihai-sysbio
closed
1 year ago
1
feat: add UniProt identifiers
#349
cheng-yu-zhang
closed
1 year ago
0
fix: correct spontaneous r_0029 and r_0030
#347
edkerk
closed
1 year ago
0
feat: correct fructose transport
#346
edkerk
closed
1 year ago
0
chore: add standard-GEM.md
#345
edkerk
closed
1 year ago
3
feat: add metabolite SMILES
#344
edkerk
closed
1 year ago
0
yeast 8.7.0
#343
edkerk
closed
1 year ago
0
chore: small updates in aux functions and files
#342
edkerk
closed
1 year ago
0
fix: install dependencies in workflow
#341
mihai-sysbio
closed
1 year ago
0
unable to locate model when running io.read_yeast_model() in Python
#340
qqqtomcat
closed
1 year ago
1
yeast 8.6.3
#339
edkerk
closed
1 year ago
8
duplicate metabolites identified
#338
feiranl
opened
1 year ago
1
Volatile Esters & Polyphosphate Reactions
#337
edkerk
closed
1 year ago
5
Volatile Esters & Polyphosphate Reactions
#336
uliebal
closed
1 year ago
1
reaction references
#334
mihai-sysbio
opened
1 year ago
0
chore: update workflows
#333
mihai-sysbio
closed
1 year ago
0
Fructose transport is represented as a symporter instead of facilitated diffusion
#332
davidhcsic
closed
1 year ago
0
check Lys2 and Leu2 gene associations
#331
edkerk
closed
1 year ago
1
feat: add metDeltaG and rxnDeltaG fields
#330
cheng-yu-zhang
closed
1 year ago
4
Update according to genome update in 2021
#328
feiranl
opened
1 year ago
0
some memote workflows are failing
#327
mihai-sysbio
closed
11 months ago
3
fix: add missing standard-GEM file
#326
mihai-sysbio
closed
1 year ago
0
References for anaerobic benchmarking
#325
mperisin-lallemand
closed
1 month ago
11
yeast 8.6.2
#324
edkerk
closed
2 years ago
0
ATP synthase mitochondrial complex curation
#323
ae-tafur
closed
2 years ago
4
cerevisiae with radiation simulation is possible?
#322
nightandweather
closed
2 years ago
1
yeast 8.6.1
#321
edkerk
closed
2 years ago
1
feat: Uniprot annotations for all genes
#320
edkerk
closed
11 months ago
5
feat: single ec-code annotation per reaction
#319
edkerk
opened
2 years ago
5
feat: metSMILES annotation
#318
edkerk
closed
1 year ago
1
feat: KEGG pathway annotation
#317
edkerk
opened
2 years ago
0
chore(deps-dev): bump pip-tools from 6.6.1 to 6.6.2 in /requirements
#316
dependabot[bot]
closed
2 years ago
2
Correction of compartment reaction——peroxisome
#315
cheng-yu-zhang
closed
1 year ago
1
Correction of compartment reaction——lipid droplet
#314
cheng-yu-zhang
closed
1 year ago
3
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