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SysBioChalmers
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yeast-GEM
The consensus GEM for Saccharomyces cerevisiae
http://sysbiochalmers.github.io/yeast-GEM/
Creative Commons Attribution 4.0 International
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feat: add 19 new GPR and consolidate curations between model releases
#313
cheng-yu-zhang
closed
2 years ago
5
fix: reduce dependency
#312
edkerk
closed
2 years ago
0
yeast 8.6.0
#311
edkerk
closed
2 years ago
0
Feat: A python function for anaerobic condition setup
#310
feiranl
opened
2 years ago
1
refactor: reduce dependencies modelTests
#309
edkerk
closed
2 years ago
1
Interoperability improvements for `yeast-GEM.mat`
#308
exaexa
closed
2 years ago
4
Unique subsystem of rxn
#307
cheng-yu-zhang
closed
2 years ago
12
Transporter annotation for transport rxns
#306
cheng-yu-zhang
closed
2 years ago
9
Complex annotation
#305
cheng-yu-zhang
closed
2 years ago
8
add reactions based on KEGG and MetaCyc annotations
#304
cheng-yu-zhang
closed
1 year ago
11
feat: standardize and simplify curation of yeast-GEM
#303
edkerk
closed
1 year ago
10
feat: function for reproducible and convenient model curation
#302
edkerk
closed
2 years ago
0
refactor: reduce dependencies and remove metabolite ID suffixes
#301
edkerk
closed
2 years ago
5
add-rxn.prop: Hydrogen Sulfide Addition
#300
wtscott31
closed
2 years ago
8
Feat-stoichiometry coefficients for subunits in the enzyme complex
#297
feiranl
opened
2 years ago
10
feat: volatiles produced by S. cerevisiae
#296
feiranl
closed
1 year ago
6
Feat-Polyphosphate metabolism
#295
feiranl
closed
1 year ago
1
Fix-amino acid pathways localization
#294
feiranl
opened
2 years ago
1
Question about ferredoxin iron-sulfur cluster
#292
katajar
closed
1 year ago
3
reference for irreversible malate dehydrogenase during anaerobic simulation
#291
mperisin-lallemand
closed
1 month ago
8
fix-bug: update the reversibility of reaction r_0446
#290
feiranl
closed
2 years ago
0
feat: have SLIMEr as option
#289
edkerk
opened
2 years ago
0
feat: curate grRules with GPRuler output
#288
edkerk
opened
2 years ago
0
fix: use python 3.9.7 in GitHub Actions
#287
edkerk
closed
2 years ago
0
doc: tutorial for yeast-GEM
#286
edkerk
opened
2 years ago
0
Develop
#285
edkerk
closed
2 years ago
2
chore: disable Dependabot, update dependencies with each release instead
#284
edkerk
closed
2 years ago
0
bug: unnecessary invalid BiGG identifiers suggested
#282
edkerk
opened
2 years ago
1
bug: inconsistency in metabolite identifiers and names between .yml, .txt and .xml files.
#281
edkerk
closed
2 years ago
1
How to used the ID of metabolites correctly in COBRApy?
#280
LGJee
closed
2 years ago
2
chore(deps): bump babel from 2.9.0 to 2.9.1 in /requirements
#279
dependabot[bot]
closed
2 years ago
0
chore(deps-dev): bump pip-tools from 6.2.0 to 6.3.0 in /requirements
#278
dependabot[bot]
closed
2 years ago
0
chore(deps): bump symengine from 0.7.2 to 0.8.1 in /requirements
#277
dependabot[bot]
closed
2 years ago
0
chore(deps): bump notebook from 6.4.1 to 6.4.4 in /requirements
#276
dependabot[bot]
closed
2 years ago
0
What's the expected growth rate of yeast8?
#275
BeeAnka
closed
2 years ago
3
chore(deps): bump notebook from 6.4.1 to 6.4.3 in /requirements
#274
dependabot[bot]
closed
3 years ago
1
chore(deps): bump python-dotenv from 0.17.0 to 0.19.0 in /requirements
#273
dependabot[bot]
closed
2 years ago
0
chore(deps-dev): bump pip-tools from 6.0.1 to 6.2.0 in /requirements
#272
dependabot[bot]
closed
3 years ago
0
chore(deps): bump notebook from 6.3.0 to 6.4.3 in /requirements
#271
dependabot[bot]
closed
3 years ago
0
chore(deps): bump memote from 0.12.0 to 0.13.0 in /requirements
#270
dependabot[bot]
closed
3 years ago
0
chore(deps): bump cobra from 0.21.0 to 0.22.1 in /requirements
#269
dependabot[bot]
closed
3 years ago
0
chore: push dependabot config to main
#268
edkerk
closed
3 years ago
2
fix: dependabot config
#267
edkerk
closed
3 years ago
4
chore(deps): bump notebook from 6.3.0 to 6.4.1 in /requirements
#266
dependabot[bot]
closed
3 years ago
1
Fix: no flux in TCA when maximizing ATP production
#265
feiranl
closed
2 years ago
5
chore(deps): bump urllib3 from 1.26.4 to 1.26.5 in /requirements
#264
dependabot[bot]
closed
3 years ago
7
chore(deps): bump pydantic from 1.8.1 to 1.8.2 in /requirements
#263
dependabot[bot]
closed
3 years ago
3
yeast 8.5.0
#262
edkerk
closed
3 years ago
7
chore: change branch names
#261
edkerk
closed
3 years ago
1
yeast 8.5.0
#260
edkerk
closed
3 years ago
5
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