-
- The calculation of the initial amplitudes (normalisation) fails for this case. The amplitudes (eps1_0,eps2_0) are offset in the horizontal plane (see fma_emit_lhc2016_scan_qx22_qy10_p27.png). One re…
-
Hello,
I'm trying to use poolhap to infer haplotypes frequencies from pooled-samples.
When i ran the infer option with halotypes matrix and associated pileup file, i encountered an issue that i d…
-
Hi,
is there a way to generate an output with the actual data from PCA in a flatfile format instead of plot only?
Thanks
Michael
-
Is there a reason y'all can think of that I would be getting an 'all counts filtered' error when using human genes?
I started with a mouse Seurat object and converted into a h5ad object with human …
-
We have noticed that using Principal Component Analysis via `PCA.pca(...)` on our models is seriously reducing quality of their results. After long analysis our prime suspect was the fact that `INDArr…
-
### Support Questions
I have feeds with "Caching Enabled" selected, but under the "Cached" column on the Feeds table, "Not Cached" is displayed. Although I have tried the "Cache all feeds" button, an…
-
The differential expression analysis tutorial recommends to aggregate data from the same donor in pseudo-replicates, if technical replicates from the same donor are not available.
> If there are se…
-
I am trying to analyze my spatial transcriptomics data generated from 10X Genomics Visium using the stCancer package. However, when running the stStatistics() function, I encounter the following error…
-
### Background
R types use attributes in a number of ways that rgo cannot currently replicate without prior work in R (see [the matrix handling example](https://github.com/rgonomic/rgo/tree/ee1b992…
-
Hi,
I am using diann to analyze DIA data, do I need to do additional normalization after getting MaxLFQ values? For example, quantile normalization or something like that. Because the volcano diagr…