-
Hello!
I have very little coding experience, and I was wondering if it was possible to run AptaTrace without the primer regions being involved in structure prediction. My SELEX experiment removed t…
-
Hi CellOracle team,
We noticed that the file "TAIR10_tss_info.bed.txt" you provided for Arabidopsis thaliana TAIR10 motif analysis contains gene names that correspond to different genes. For exampl…
-
@aarmey during my lab meeting I realized I was trying to solve separate problems with the same solutions whereas they should be addressed individually so I put together this table to summarize what we…
-
https://mp.weixin.qq.com/s/DxNooI4qu3fr9oAcdT0mRA
ixxmu updated
2 years ago
-
https://mp.weixin.qq.com/s/DxNooI4qu3fr9oAcdT0mRA
ixxmu updated
2 years ago
-
## Bi-weekly meeting memo
0. Files that Shannon will share to Tao
- ATAC-seq datasets: fastq
- variant dataset: vcf
- packages: R Bioconductor, ChIPPeakAnno, ChipSeerker
1. make the footprint f…
-
https://mp.weixin.qq.com/s?__biz=MzAxMDkxODM1Ng==&mid=2247484960&idx=1&sn=80641a93f36800d791eca95f41d4f2f9&chksm=9b48469bac3fcf8d7736fe5e04794db90dbc6d13b3261efa2ba14bd15c78aa6433c5059fa4ea&scene=21#w…
ixxmu updated
2 years ago
-
I want to use human_pwms_v2 (https://github.com/GreenleafLab/chromVARmotifs) to do motif analysis. But it is a pwm format. I check the parameter of addMotifs function, it only have a pfm parameter. …
-
https://mp.weixin.qq.com/s/keyIKhlHBfUHVeA41obshg
ixxmu updated
2 years ago
-
[Splicing mechanism](https://www.youtube.com/watch?v=vMMt0jA8dcM)
Intron
- starting point: 5' (5 prime) splice site: splice donor, GT***
- ending point: 3' (3 prime) splice site: splice acceptor, *…