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meyer-lab
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DDMC
Clusters phosphoproteomics data based on a combination of the sequence information and abundance changes over conditions.
https://asmlab.org
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Bump scikit-learn from 1.4.0 to 1.5.0
#540
dependabot[bot]
opened
2 months ago
0
Bump urllib3 from 2.1.0 to 2.2.2
#539
dependabot[bot]
opened
2 months ago
0
Bump requests from 2.31.0 to 2.32.0
#538
dependabot[bot]
opened
3 months ago
0
Bump idna from 3.6 to 3.7
#537
dependabot[bot]
opened
4 months ago
0
Bump pillow from 10.2.0 to 10.3.0
#536
dependabot[bot]
opened
5 months ago
1
improve sequences validation
#535
armaan-abraham
closed
6 months ago
1
Refactor and tidy
#534
armaan-abraham
closed
7 months ago
0
Cleanup to get figures building again
#533
aarmey
closed
6 months ago
3
Bump scipy from 1.7.1 to 1.10.0
#532
dependabot[bot]
closed
7 months ago
1
More clean up
#531
mcreixell
closed
7 months ago
0
Clean
#530
aarmey
closed
2 years ago
0
RNAseq preds.
#529
mcreixell
closed
2 years ago
0
Various AXL updates
#528
mcreixell
closed
2 years ago
15
RNAseq analysis
#527
mcreixell
closed
2 years ago
1
Fixes by autopep8 action
#526
github-actions[bot]
closed
2 years ago
0
import RNA data.
#525
mcreixell
closed
2 years ago
2
Add RNAseq file and DDMC Figures 4 and S3
#524
mcreixell
closed
2 years ago
1
Make DDMC return validated substrates
#523
mcreixell
closed
2 years ago
1
Figure 6 and S6
#522
mcreixell
closed
2 years ago
1
Fixes by autopep8 action
#521
github-actions[bot]
closed
2 years ago
0
Fixes by autopep8 action
#520
github-actions[bot]
closed
2 years ago
0
Figure M7: Peptides tracking HTE / CTE samples
#519
mcreixell
closed
2 years ago
0
Fig m7and supps
#518
mcreixell
closed
2 years ago
1
Fixes by autopep8 action
#517
github-actions[bot]
closed
2 years ago
0
Fixes by autopep8 action
#516
github-actions[bot]
closed
2 years ago
0
Update DDMC figures M2-M6
#515
mcreixell
closed
2 years ago
1
Impute on each iteration of fitting
#514
aarmey
closed
2 years ago
14
Fixes by autopep8 action
#513
github-actions[bot]
closed
2 years ago
0
Clustering outcomes comparison
#512
aarmey
closed
2 years ago
6
Notes on AXL manuscript Fig. 1
#511
aarmey
closed
2 years ago
0
add figureM3.
#510
mcreixell
closed
2 years ago
1
Fixes by autopep8 action
#509
github-actions[bot]
closed
2 years ago
0
Notes space for comparing different clustering methods
#508
aarmey
closed
2 years ago
2
Predictions
#507
mcreixell
closed
2 years ago
2
Discuss GSEA plots
#506
mcreixell
closed
2 years ago
0
wider search.
#505
mcreixell
closed
2 years ago
4
Fixes by autopep8 action
#504
github-actions[bot]
closed
2 years ago
0
Muting randomized_svd warning
#503
mcreixell
closed
2 years ago
3
New missingness approach
#502
aarmey
closed
2 years ago
3
Pca rna
#501
scottdtaylor95
closed
2 years ago
5
build figureM2.svg
#500
mcreixell
closed
2 years ago
1
Fixes by autopep8 action
#499
github-actions[bot]
closed
2 years ago
0
update fig3.
#498
mcreixell
closed
2 years ago
0
Replace .from_samples with DDMC=0
#497
mcreixell
closed
2 years ago
1
Fixes by autopep8 action
#496
github-actions[bot]
closed
2 years ago
0
Move to sklearn gmm implementation
#495
aarmey
closed
2 years ago
20
Various edits
#494
mcreixell
closed
2 years ago
2
Move pomegranate within repository
#493
aarmey
closed
2 years ago
5
Word document export error
#492
mcreixell
closed
2 years ago
2
Update text and address "easy" reviews.
#491
mcreixell
closed
2 years ago
2
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