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This thread is to discuss adding an OpenMM command line application to Omnia, so that people can run OpenMM from the command line instead of writing a script. Robert and I wrote a package which is a …
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We measure the mean and sd of the blank samples and return a message with the persentage of high variable metabolites in the blank samples.
I am not sure what would be a decent cut-off for SD to ta…
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Previously we have had issues when one ontology *injected* axioms into another
For example, previously OBI injected an axiom `GO:molecular_function subClassOf BFO:function`
This did not contrave…
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Overview:
This needs to be a stylized, step-based form that users fill out when first creating their account, or should come back to.
Requirements:
- Use React Bootstrap and **conform to the …
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Hi,
I just need to create an object to get a reverse-complement of it and write out a FASTA and FASTQ file. I have the following function:
```
from Bio.SeqRecord import SeqRecord
from Bio.Seq impor…
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This issue is a roadmap for Molly.jl development. Feel free to discuss things here or submit a PR. Bear in mind that significant refactoring will probably occur as the package develops.
### Low han…
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Hello,
Thanks for Chroma! It is a pretty great tool.
I do have a query - is there a way to design multiple sequences (say 10) for the same input structure? I am new to Chroma and have tried ru…
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The molnet loader functions are currently divided into two groups with inconsistent APIs for specifying featurizers and splitters.
Most of them have arguments `featurizer` and `split` to specify th…
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Given the new `OnDiskMSnExp` infrastructure, it is time to upgrade the `quantify` method. I am considering the following signature (only focusing on the most important arguments for now):
```r
quant…
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Hi,
I thought I can use `GenomicRanges` to create its objects based on `[(start1,end1), (start2,end2), (start3,end3), (start4,end4), (start5,end5)]` exon positions and then unify these splice varia…