generatebio chroma issues

generatebio / chroma

A generative model for programmable protein design

Apache License 2.0

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issues

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Update requirements.txt (loosen transformers library version)

#59 AhmedTammaa opened 3 weeks ago
1
Import issues with Chroma

#58 venzera closed 1 month ago
1
Example of script for binder design

#57 ahof1704 opened 2 months ago
0
Problem in installation

#56 calimbrasti94 opened 2 months ago
0
Refinement of structure?

#55 gezmi opened 4 months ago
0
Conditioning on protein of different length than protein to be designed

#54 sweatyaiguy opened 4 months ago
1
Is the training code available?

#53 LtECoD opened 5 months ago
0
linking downloaded weight for offline chroma usage

#52 peptidelinks opened 6 months ago
10
Example of training a classifier based on graphclassifier

#51 Zebreu opened 6 months ago
0
Create functional proteins from a given protein Template/Profile?

#50 Travis13197 opened 6 months ago
1
SWE-agent[bot] PR to fix: Batched conditional generation

#49 wujiewang opened 7 months ago
0
Design multiple sequences for the same input structure

#48 prateekbansal97 closed 7 months ago
4
Made a few adjustments, please check out. 'samples' issue and batch splitting.

#47 sona9soba opened 9 months ago
0
RuntimeError: Expected all tensors to be on the same device, but found at least two devices, cuda:0 and cpu!

#46 ppxwwtaking closed 9 months ago
4
How to design the interface residues within complex.

#45 ning-2022 closed 9 months ago
0
HTTPError: 500 Server Error: Internal Server Error for url: https://chroma-weights.generatebiomedicines.com/downloads?token=%5B<api-key>%5D&weights=chroma_backbone_v1.0.pt

#44 Hanoriega closed 9 months ago
5
De-novo binder generation with a hotspot

#43 kushnarang opened 10 months ago
1
How to do deterministic sampling?

#42 Lifedecoder closed 9 months ago
4
Computing the TM score against the PDB dataset

#41 ahof1704 opened 10 months ago
0
Tensors not on the same device

#40 Bloeci closed 9 months ago
2
Substructure Conditioner - Supplementary Appendix O

#39 jlotthammer closed 9 months ago
4
Prediction of secondary structure

#38 ahof1704 closed 10 months ago
2
Example on how to condition on Sequence (and Structure)

#37 fabiotrovato closed 10 months ago
11
Constrained diffusion on one chain in a protein complex

#36 caseysm closed 10 months ago
3
Progress Bars during Sampling

#35 LaurinLang closed 10 months ago
1
problem about "protein = chroma.design(protein)"

#34 ning-2022 closed 10 months ago
3
Question for CDRs Method

#33 Charlesjc-lab closed 10 months ago
3
the structure of sequences generated by chroma.design()

#32 Lyn-666 closed 10 months ago
5
Where could I find the code to generate the results in paper fig3 b?

#31 songhe2009 opened 11 months ago
0
Length-variable design with substructure conditioner

#30 Immortals-33 closed 11 months ago
4
'display' issue

#29 venuv closed 11 months ago
2
ProClass Conditioner List of Values

#28 dannyoo closed 11 months ago
1
Binder design notebook with specified hotspot

#27 Samuel-gwb closed 10 months ago
3
Fix small typos in README.md

#26 amorehead opened 11 months ago
0
Batched conditional generation

#25 wujiewang opened 11 months ago
0
Strange output from inpainting

#24 hnisonoff closed 11 months ago
6
Great work! Question re. weight format/transformers 4.35.2

#23 lamm-mit closed 10 months ago
2
Selection syntax

#22 bobbyhollingsworthiv closed 11 months ago
2
Is it possible to save the potts params used for sequence sampling?

#21 sokrypton closed 12 months ago
1
Conditioning on AA composition

#20 AlexWindels closed 11 months ago
2
Simple example fails on windows 11 on jupyter lab

#19 eugenio closed 11 months ago
5
Minor docstring fixes

#18 chaitjo opened 1 year ago
2
Installation fails on windows 11 and wsl2 with python >= 3.11

#17 eugenio closed 1 year ago
3
Improve sampling behaviour with samples > 1

#16 elkoz opened 1 year ago
3
long time persist model parameters

#15 cyrushu opened 1 year ago
0
De-novo binder generation

#14 kushnarang closed 11 months ago
7
fileNotFound error

#13 ecass777 closed 11 months ago
6
Protein folding

#12 kushnarang closed 1 year ago
1
Running chroma from docker

#11 e-osipov closed 1 year ago
3
Expected all tensors to be on the same device

#10 QUEST2179 closed 1 year ago
1