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Hi,
We've conducted some benchmarking in order to compare BWA-MEM to BWA-MEM2.x using multi-lane & library samples (reference genome - GRCh38).
It looks like BWA-MEM2 and 2.1 produced the almos…
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Hi,
Please find an attached inversion event breakpoint (one end of the breakpoint) in the attached image. I am working with ONT data. I tried to follow an example present here: https://www.pacb.com…
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Is there any simple sc2ts function which will take one of the output ARGs (say the long ARG) and match a specific sample into it again, at a specific time (i.e. ignoring younger samples)? This might h…
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When using the -z option to obtain a SAM file and using that same SAM file as an input for a quantification, the following error is thrown:
```
Version Info: This is the most recent version of s…
ghost updated
4 years ago
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Hi everyone,
I’m trying to calculate dN/dS values with FUBAR. In the _.fubar.csv_ result file, all values for each codon are “nan”. As I checked, all values from phase 3 output (_.samples.C_) are also…
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The attached files misalign a bit. If you run virulign using the [nef](https://github.com/rega-cev/virulign/files/6044405/11676_nef.xml.gz) xml on [this alignment](https://github.com/rega-cev/virulig…
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Hi!
I recently ran `OrthoFinder` + `muscle` and `iqtree`. One of the IQTree runs failed with a numeric underflow, so I reran it with the `-safe` option. Now it's hard to resume from there if the M…
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The unit test 'smrt-pipeline.t' shows that there are still some random elements in the pipeline and
therefore it is difficult to reproduce results exactly with multiple pipeline runs. This becomes app…
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Hello.
MMSeq2 dies after write error, The shell output is below. Anyone knows why this happens?
Thanks,
Torsten
___________________
Create directory tmp
search kelp_database uniref50 res…
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Hi,
I am using mmseqs2 for the taxonomy assignment using NR database. However, Estimated memory consumption is 2T. Is that normal? Also, my input is already protein. My another question is about th…