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I was testing out solutions for job malleability on HPC systems. I saw that FLUX can be executed in SLURM. According to this paper (https://flux-framework.org/publications/Flux-SRMPDS-final.pdf), it …
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## Reason
New machine coming to INL, let's make sure we know how to build Cardinal on it.
## Design
Add Bitterroot as a system to Cardinal's HPC documents.
## Impact
Better user experience.
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Hi Marek,
Thank you for sharing your wonderful pipeline! MINTIE is working very well in local mode submitted to our queue through an interactive job.
We have had problems with the cluster imple…
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When I attempt to run `scua` with a broader date range than just a few days or a single month, I get the following error.
```
>> ./bin/scua -S 2024-01-01T00:00 -E 2024-06-31T23:59
Running: sacct…
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There is established experience with LOTUS of packaging applications as containers using Singularity (https://singularity-docs.readthedocs.io), a technology developed specifically for use with batch c…
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When and index has been specified in the config file (i.e. `metaphlan_index_name: mpa_vOct22_CHOCOPhlAnSGB_202212`) and those files for that version are already installed in the in the metabphlan_bd d…
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### Description of the bug
Cannot download iGenomes because of Access ID Key invalid
Downloading plugin nf-amazon@2.5.3
ERROR ~ The AWS Access Key Id you provided does not exist in our records. (…
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## Bug report
Issue #1172 persists in version 23.04.3
### Expected behavior and actual behavior
I expect a process task to return a non-zero exit code when task output cannot be copied to work…
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## Overview
**General Use Case:** user launches funnel and then launches another process to issue the jobs, all while using named sockets to handle communication between the funnel server and the j…
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Hello,
we prepared some scripts with a README to help you to start with the cluster.
### step1:
- read the quick start guide available here: https://ifb-elixirfr.gitlab.io/cluster/doc/quick-sta…