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My thought is that if you can create bins with it, then why shouldn't you be able to split it?
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Running the 2.3.2-master, I had anvio skip PC's in a bin that actually had single gene calls resulting in an empty fasta file.
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Hi
I just installed the latest version of anvio to try out the single copy gene analyses and there's only two hmms: Campbell and Rinke. Alneberg and Creevey ones are not in the repo, is there a wa…
ghost updated
7 years ago
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@tdelmont thinks this is is confusing, and it should follow the order the in the file.
these lines are related with this issue:
[https://github.com/merenlab/anvio/blob/master/anvio/dbops.py#L2086-…
ozcan updated
7 years ago
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meren updated
7 years ago
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When working with a large dataset using the (new profiling branch)[/merenlab/anvio/tree/new-profiling], anvi-profile gets thruogh a few contigs quickly and then stops progressing. The system reports n…
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Hi
Using anvio v2.3.1 (stable release), I generated the contigs database. The job completed without errors. The size of the db and h5 files were 13G/1.5G. All subsequent anvi steps went without a …
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Hi @meren,
I have been fiddling around and I got to make a simple Shell script to get the IPRS output with `-goterms` into the anvio database. So I thought somebody would find it useful.
Note that…
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We need to make sure,
* The first row under the header is being parsed properly,
* Sorting layers based on orders automatically-generated from samples-information file works the it should.
Here…
meren updated
7 years ago
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@ShaiberAlon noticed and reported this problem today. In the beginning I suspected from parameters but after spending hours on it, I could not find anything. Then I started playing with the headers an…
ozcan updated
6 years ago