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I am projecting a RangeSummarizedExperiment of bulk ATAC-seq onto the snATAC-seq project. Running with `threads=1` or with automatic detection gets two similar errors in one of the calls somewhere.
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badoi updated
3 years ago
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Hello! Appreciate this great package!
**Describe the problem that your feature request would address.**
I would like to run ChromVAR's motif synergy function and motif correlation functions (getAn…
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ArchR : Version 1.0.1
I tried to run DoubletScores(), and input is an ArchRProject object. I got the following error message. Could you help me to figure it out? Thanks.
```
> doubScores
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**Describe the bug**
When subsetting, copying errors seem to occur.
**To Reproduce**
Using a large dataset, run through to addDeviationsMatrix. Then try to subset.
In this case, the larger data…
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Is it possible to Impute the Peak-count matrix? As we all know, the analysis of scATAC-seq data is particularly challenging because sparsity is intrinsic to these assays. Many tools, such as FITs (ht…
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Hello!
Is it possible to use the predictive capability of UMAP? I would like to project a different data set onto an existing UMAP from an ArchR project.
Thank you! Josephine
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When analyzing the 10X Multiomic data using ArchR what are the steps involved in annotating the clusters?
Since the multi-omic data contains both ATAC + RNA information what steps would replace de…
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I recently started using ArchR for some elementary data analysis and have a query. I executed the following command and the attached QC plot was created because of it. As you can see in the plot, the …
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[ArchR-createArrows-c5b539cb0b55-Date-2021-03-17_Time-13-55-13.log](https://github.com/GreenleafLab/ArchR/files/6153868/ArchR-createArrows-c5b539cb0b55-Date-2021-03-17_Time-13-55-13.log)
Thank you …
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I have some data that is processed and presented as a peak matrix. It would be quite useful to use this peak matrix as the starting point in ArchR. Is it possible to add this feature, without needing …