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Dear Biom-format developers,
When I try to convert a tsv biom table to hdf5 format with this command:
`biom convert -i ./otu_table.tsv -o ./otu_table.biom --table-type 'OTU table' --to-hdf5`
I get t…
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Are there any plans in getting a BLAST parser added to the project?
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With the latest dev version of numpydoc the docs fail to build on master for me. Can anyone else reproduce this?
``` shell
$ pip freeze | grep numpydoc
numpydoc==0.6.dev0
$ make -C doc clean html
rm …
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I am using qiime and I am trying t the moment to import files from qiime into phyloseq.
The problem that I am facing is that after importing a biom file, a map file and a tree file I am getting the …
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Hello,
I recently tried installing qiime using pip and received the following error during the installation of biom-format:
building 'biom._filter' extension
creating build/temp.macosx-10.10-x8…
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I recently tried installing qiime on my mac using pip. I received the following error when trying to install qiime:
```
building 'biom._filter' extension
creating build/temp.macosx-10.10-x86_64-2.7
…
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Hi everyone,
Im new to phylose and I have been trying to get my files to work within the package. I created a folder within the package called "tabe_original" where I placed my OTU table, Mapping fi…
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I have a problem when importing a biom file. I'm always getting the same error message when running this command (no matter what reference database I use in Qiime ):
import_biom(biomfile, treefile, …
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Hi. I have tried repeatedly to download files from the qitta using the above command and was never able to establish a connection with the server. I was wondering if I am the problem ( I may be missin…
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