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biocore
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biom-format
The Biological Observation Matrix (BIOM) Format Project
http://biom-format.org
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Testing NumPy 2.0 compatibility...
#973
qiyunzhu
closed
4 weeks ago
1
From dataframe
#972
mortonjt
opened
1 month ago
0
Adding table metadata
#971
Midnighter
opened
2 months ago
3
Wheels are not being built properly
#970
wasade
opened
2 months ago
10
missing uses
#969
wasade
closed
2 months ago
0
REL: denote 2.1.16
#968
wasade
closed
2 months ago
0
Issue 937
#967
wasade
closed
2 months ago
0
MAINT: support capital T Taxonomy on adding metadata
#966
wasade
closed
2 months ago
0
TypeError: the JSON object must be str, bytes or bytearray, not File
#965
thomasstjerne
opened
2 months ago
9
Issue 958
#964
wasade
closed
2 months ago
0
Issue 957
#963
wasade
closed
2 months ago
0
Issue 956
#962
wasade
closed
2 months ago
1
Issue 952
#961
wasade
closed
2 months ago
4
BUG: ci was not executing across python versions
#960
wasade
closed
2 months ago
0
Issue 948
#959
wasade
closed
2 months ago
0
Expose the _subsample method
#958
wasade
closed
2 months ago
0
update_ids can silently truncate IDs
#957
wasade
closed
2 months ago
0
NumPy compatibility issue (further)
#956
qiyunzhu
closed
2 months ago
12
NumPy 2.0 compatibility issue
#955
qiyunzhu
closed
2 months ago
2
DOC: changelog
#954
wasade
closed
2 months ago
0
Removed dependency on natsort
#953
qiyunzhu
closed
3 months ago
2
Edge case for biom.Table subsample with replacement
#952
mortonjt
closed
2 months ago
7
Windows support
#951
mataton
closed
3 months ago
6
Supporting NumPy 2.0
#950
qiyunzhu
closed
3 months ago
6
WIP Supporting Windows and Python 3.12
#949
qiyunzhu
closed
3 months ago
3
align_tree cannot handle features with 0 counts
#948
dpear
closed
2 months ago
3
Possible to represent relative abundance of taxonomy rather than OTUs?
#947
wwood
closed
2 months ago
4
`add-metadata` help messages need clarity
#946
wasade
opened
5 months ago
0
`add-metadata` is representing Taxonomy as np array of byte strings
#945
wasade
closed
2 months ago
1
`add-metadata` is not representing floats correctly
#944
wasade
closed
2 months ago
1
update_ids strict=False is not necessarily working as expected
#943
wasade
closed
2 months ago
1
Issue adding biom-format support for aarch64 conda
#942
constellation99
closed
2 months ago
9
Trouble with installation using pip
#941
UmaJan
closed
6 months ago
8
MAINT: adjust to change in pd.DataFrame interaction with >
#940
wasade
closed
8 months ago
0
Fix build issues
#939
sfiligoi
closed
2 months ago
1
More gracefully deal with not-perfectly-integer inputs
#938
sfiligoi
closed
8 months ago
2
Expand partiton API
#937
wasade
closed
2 months ago
2
Addition of a project using the BIOM format
#936
ake123
closed
11 months ago
1
Use rng.choice without unpacked in subsample_without_replacement with 64-bit support
#935
sfiligoi
closed
11 months ago
4
Implement subsample_without_replacement using C++17 std::sample
#934
sfiligoi
closed
1 year ago
3
Faster merge
#933
wasade
closed
1 year ago
6
Add wheel testing
#932
wasade
opened
1 year ago
0
Release testing
#931
wasade
closed
1 year ago
0
Issue 897
#930
wasade
closed
1 year ago
0
Issue 894
#929
wasade
closed
1 year ago
0
Issue 890
#928
wasade
closed
1 year ago
0
Issue 926
#927
wasade
closed
1 year ago
0
group-metadata in example files?
#926
thomasstjerne
closed
1 year ago
1
Sample metadata handled differently by implementations
#925
chrysn
closed
2 months ago
3
DOC: revise changelog to reflect recent PRs
#924
wasade
closed
1 year ago
0
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