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biocore
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biom-format
The Biological Observation Matrix (BIOM) Format Project
http://biom-format.org
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Sample metadata handled differently by implementations
#925
chrysn
closed
3 months ago
3
DOC: revise changelog to reflect recent PRs
#924
wasade
closed
1 year ago
0
Issue 895
#923
wasade
closed
1 year ago
0
Issue 886
#922
wasade
closed
1 year ago
0
Issue 892
#921
wasade
closed
1 year ago
0
Issue 896
#920
wasade
closed
1 year ago
5
Disallow head to have values <= 0
#919
wasade
closed
1 year ago
3
Issue 901
#918
wasade
closed
1 year ago
0
Issue 912
#917
wasade
closed
1 year ago
0
Explicitly allow setting a random seed for subsample
#916
wasade
closed
1 year ago
5
Issue 913
#915
wasade
closed
1 year ago
0
Setting a random seed
#914
wasade
closed
1 year ago
0
Subsample relies on int32
#913
wasade
closed
1 year ago
0
pytest, Pandas and NumPy deprecation warnings
#912
peterjc
closed
1 year ago
1
Link to THAPBI PICT under projects using the BIOM format
#911
peterjc
closed
1 year ago
1
Don't sort metadata order
#910
peterjc
closed
1 year ago
0
locale.format --> locale.format_string
#909
peterjc
closed
1 year ago
2
table_summarizer.py DeprecationWarning locale.format --> locale.format_string
#908
peterjc
closed
1 year ago
1
Metadata order not preserved via biom export-metadata
#907
peterjc
closed
1 year ago
1
chore: remove cython from requirements
#906
Midnighter
closed
1 year ago
3
defaultdict(int) vs Counter() and memory usage
#905
peterjc
closed
1 year ago
2
dict is sorted in currently supported versions of Python
#904
peterjc
closed
1 year ago
1
Required attribute table type not checked consistently
#903
peterjc
opened
1 year ago
6
Fix typo
#902
peterjc
closed
1 year ago
0
Misleading behaviour with biom validate and classic TSV input
#901
peterjc
closed
1 year ago
1
Report all validation failures
#900
peterjc
closed
1 year ago
0
biom head -n 0 and -m 0 not supported
#899
peterjc
closed
1 year ago
1
pip check reports cython as a requirement
#898
Midnighter
closed
1 year ago
3
Streamline IO methods
#897
wasade
closed
1 year ago
0
Unable to use biom without h5py installed
#896
peterjc
closed
1 year ago
3
JSON and HDF5 output data not reproducible due to timestamp
#895
peterjc
closed
1 year ago
1
Add pathlib support for saving BIOM files
#894
gibsramen
closed
1 year ago
1
Update URL for MG-RAST, VAMPS project
#893
peterjc
closed
1 year ago
1
An inplace update which fails will still modify IDs
#892
wasade
closed
1 year ago
0
AttributeError: module 'numpy' has no attribute 'typeDict'
#891
nano1231
closed
1 year ago
9
When a osx-arm64 build ?
#890
borexino
closed
1 year ago
1
Remove duplicated install requirement
#889
nsoranzo
closed
1 year ago
1
Avoid dense transform collapse
#888
wasade
closed
1 year ago
1
Table.collapse performance issue
#887
qiyunzhu
closed
1 year ago
4
Conversion from hdf5 to json fails on int64´s
#886
thomasstjerne
closed
1 year ago
3
REL: denote release
#885
wasade
closed
1 year ago
0
PERF: use sparse matrix for table.collapse(..., one_to_many=True)
#884
wasade
closed
1 year ago
4
Drop py3.6 support
#883
wasade
closed
1 year ago
1
No wheel files on PyPI
#882
peterjc
closed
1 year ago
3
take column names from all metadata not just first entry
#881
asafpr
closed
1 year ago
2
Fix a bug in metadata_to_dataframe
#880
asafpr
closed
1 year ago
1
Clarification about ID type in the docs for Table.update_ids
#879
fedarko
closed
1 year ago
12
Install biom-format with python 2.7
#878
jconoranderson
closed
2 years ago
1
Bump 2.1.11 dev
#877
wasade
closed
1 year ago
0
Rel 2.1.11
#876
wasade
closed
2 years ago
0
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