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biocore
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biom-format
The Biological Observation Matrix (BIOM) Format Project
http://biom-format.org
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Rel 2.1.11
#876
wasade
closed
2 years ago
0
Metadata slashes
#875
wasade
closed
2 years ago
0
Empty tsv edgecase
#874
wasade
closed
2 years ago
0
relax test to allow h5py to vary, cc @tillea
#873
wasade
closed
2 years ago
1
Preserve str type, set fixed width on load, and set fixed with on update_ids
#872
wasade
closed
2 years ago
0
perf: cache nnz on write
#871
wasade
closed
2 years ago
0
it would be nice to easily remove blanks
#870
wasade
opened
2 years ago
2
conda install biom-format PackagesNotFoundError
#869
jindongmin
closed
2 years ago
12
AssertionError: 'GUT' not found in (b'GUT', b'SKIN')
#868
tillea
closed
2 years ago
1
Patch for python3.10 available in Debian
#867
tillea
closed
2 years ago
5
Improve Table.collapse by roughly 10x
#866
wasade
closed
2 years ago
2
Add support for Python 3.10
#865
nsoranzo
closed
2 years ago
24
Failing tests
#864
nileshpatra
closed
1 year ago
8
Please update sphinx API
#863
tillea
closed
2 years ago
0
Faster groupby operations
#862
mortonjt
closed
2 years ago
9
Metadata field names containing a slash cause bad hdf5 output
#861
santonow
closed
2 years ago
1
Add flag to relax `remove_empty()`
#860
mortonjt
closed
3 years ago
2
Align methods for #858
#859
mortonjt
closed
3 years ago
5
Porting matching functions from gneiss
#858
mortonjt
closed
3 years ago
4
ModuleNotFoundError: No module named 'biom'
#857
arsilan324
closed
3 years ago
4
fix #770 date keyword in Python >= 3.7
#856
schferbe
closed
3 years ago
2
metadata_to_dataframe order matters
#855
guillaume-gricourt
opened
3 years ago
3
improve error or support empty tsv files
#854
antgonza
closed
2 years ago
1
Normalize metadata on parse
#853
wasade
closed
3 years ago
1
Taxonomy information not retrieve
#852
MaryoHg
closed
2 years ago
6
Simplify concat
#851
wasade
closed
3 years ago
2
Adjacency to biom
#850
wasade
closed
3 years ago
2
Fix citation URL
#849
wasade
closed
3 years ago
2
Fast merge
#848
wasade
closed
4 years ago
1
PERF: Optimize remove_empty
#847
ElDeveloper
closed
4 years ago
5
Assess/fix build failures
#846
wasade
closed
3 years ago
0
add to_anndata conversion
#845
adamgayoso
closed
4 years ago
6
Feature request: AnnData converesion
#844
adamgayoso
closed
4 years ago
1
Outputting biom file from dada2 outputs
#843
sandipansamaddar
closed
3 years ago
3
Is it normal that the result of biom add-metadata using v2.1.8 is different from v2.1.7?
#842
sentausa
closed
3 years ago
1
ValueError: column index exceeds matrix dimensions
#841
WaterKnight1998
closed
3 years ago
9
Numpy and Cython as build dependencies, PEP518
#840
fbeghini
closed
4 years ago
4
Failed to install with Python2.7
#839
Nits11
closed
4 years ago
1
Make to_dataframe use the new Sparse data structures from pandas >= 0.25
#838
fedarko
closed
4 years ago
12
Test issue with pandas1.0
#837
tillea
closed
3 years ago
9
feat: allow for direct tsv output
#836
wwydmanski
closed
4 years ago
4
BLD: depend on cython / h5py, remove pre-generated C files
#835
wasade
closed
4 years ago
2
DOC: move sphinx to py37 as it seems pesky on py36
#834
wasade
closed
4 years ago
1
Docs to py37
#833
wasade
closed
4 years ago
3
Force cython
#832
wasade
closed
4 years ago
2
Bump to 2.1.8, minor py2 removal cleanup, and CI exercise test
#831
wasade
closed
4 years ago
2
BLD/DOC: bump scipy version and make changelog mention
#830
wasade
closed
4 years ago
2
BLD: test support for py38
#829
wasade
closed
4 years ago
2
Metadata edgecase
#828
wasade
closed
4 years ago
3
biom convert: "could not convert string to float" when first element in a metadata variable is blank
#827
KasperSkytte
closed
4 years ago
15
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