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fastq_screen does not yield non-zero exit code when aligner returns non-zero exit code.
This seems like a problem since the expected output files are all made, but the reported values will be diffe…
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Hello,
I have a question regarding running STAR Fusion on multiple FASTQ files (Same sample, different read group and paired end). I'm running STAR Fusion (1.9.0) with the chimeric file from star (…
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I'm loving tre-agrep for matching DNA sequence strings. However, I keep getting segmentation faults when my regular expression grows:
``` shell
$ tre-agrep -V
tre-agrep (TRE agrep) 0.8.0
Copyright (…
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Exactly as the title says: if I want to run STAR-Fusion with multiple FASTQs, is it best to do one pass:
````
${STARFusion} --genome_lib_dir ${CTAT_resource_lib} \
--left_fq A_1.fastq.gz,B_1.fas…
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Hi Thomas and Matt,
I'm building some code to do QC in one RNAseq project that I'm working on... I have 2 fastq.gz files per sample and I just realized this is because there's one fastq.gz file per…
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Various memcpy's in the gzip chunking code have a major performance impact:
https://github.com/tzcoolman/DRASS/blob/master/drass/big_query.c#L246
According to @radare, only a single pointer should b…
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I think it would be great to have an object / file in Qiita that we can use to keep track of the various fastq permutations. In particular, once we start doing cleaning and read trimming, we start hav…
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Hi Gherman, hope everything is OK.
I have updated metaWRAP, and am trying to use it to analise 5 metagenomes. I already used with success all commands till assembly, and now I was trying to use KRA…
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fqzcomp -s9 crashes during compression.
```
bolt% fqzcomp -s1 -e -q1 -n2 a.fastq.fqzcomp-s1
Names 61229 -> 65 (0.001)
Bases 1446700 -> 361472 (0.250)
Quals 1446700 -> …
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你好，请问当我样本有4个平行的时候，
sample_one_1.fastq
sample_one_2.fastq
sample_two_1.fastq
sample_two_2.fastq
sample_three_1.fastq
sample_three_2.fastq
sample_four_1.fastq
sample_four_2.fastq
但是我是通过共组装得到的，想…