tzcoolman FACS-OLD issues

tzcoolman / FACS-OLD

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Fixed several compiler warnings/sanity checks

#39 brainstorm closed 11 years ago
0
Yet another SIGSEGV, "cannot find bloom filter" triggers it

#38 brainstorm opened 11 years ago
0
Revamped documentation, added remove functionality to python interface (to be tested), preliminar simNGS test with cloudbiolinux helper functions

#37 brainstorm closed 11 years ago
1
Replicated code between remove and query

#36 brainstorm opened 11 years ago
2
Fix issue with "cannot open bloom filter"

#35 brainstorm closed 11 years ago
0
Debugging on CI machine

#34 brainstorm closed 11 years ago
1
Segfault on travis machine

#33 brainstorm closed 11 years ago
2
Warnings for big_query and bloom.c fixed. Segfaults fixed as a result, tests passing!

#32 brainstorm closed 11 years ago
0
Substitute FASTQ/FASTA reading by lh3 code

#31 brainstorm opened 11 years ago
1
Start using master branch

#30 brainstorm closed 11 years ago
0
Revamp main function, should resemble bwa structure

#29 brainstorm closed 11 years ago
0
Makefile, tests, includes, etc..

#28 brainstorm closed 11 years ago
1
Feature/python module

#27 brainstorm closed 11 years ago
0
Works until next segfault

#26 brainstorm closed 11 years ago
0
Feature/python module

#25 brainstorm closed 11 years ago
0
Feature/python module

#24 brainstorm closed 11 years ago
0
Integrating query() python call for the bloom filter. Problems with mult...

#23 brainstorm closed 11 years ago
0
Need for a central main.c

#22 brainstorm closed 11 years ago
3
Functional basic build() API call for DRASS bloom filter

#21 brainstorm closed 11 years ago
2
API for DRASS

#20 brainstorm closed 11 years ago
5
kmer parameter in simple_remove and simple_check should not be editable

#19 arvestad opened 11 years ago
1
Dynamic k-mer size

#18 brainstorm opened 11 years ago
0
Sampling datasets before running queries on them

#17 brainstorm closed 11 years ago
2
Statistics does not match output - simple_remove

#16 henrikstranneheim closed 11 years ago
3
Usability for non-scripting users

#15 henrikstranneheim closed 11 years ago
2
Command line parameters

#14 henrikstranneheim closed 11 years ago
17
Grow bloom filter if many collisions are detected

#13 brainstorm closed 11 years ago
0
Re-added fastq_dummy.py and initial tests for compressed fastq.gz files

#12 brainstorm closed 12 years ago
0
Support for .fastq.gz

#11 brainstorm closed 11 years ago
8
Fix for the SIGFPE issue and continuing with the cleanup...

#10 brainstorm closed 12 years ago
0
TucoWS REST interface now downloads ecoli without error lines

#9 brainstorm closed 12 years ago
0
Tests with new flags

#8 brainstorm closed 12 years ago
1
Adding up changes from @arvestad and other minor ones

#7 brainstorm closed 12 years ago
0
-o flag is invalid

#6 brainstorm closed 12 years ago
3
Reduce verbosity for passed parameters

#5 brainstorm closed 12 years ago
1
SIGSEGV with machines having more than 8 CPU's

#4 brainstorm closed 12 years ago
1
Several memory management problems should be fixed

#3 brainstorm closed 12 years ago
0
Added test suite for UPPMAX

#2 brainstorm closed 12 years ago
7
Clearer way to compile the bloom filter and general cleanup

#1 brainstorm closed 12 years ago
13