-
Hi Dr. Shao,
I'm generating the TT-seq analysis to see the influence of acute degradation of a TF on the transcription of mRNAs and eRNAs. I find your transcription unit annotation script - TU_filt…
-
Please provide as much information as you can:
* **GO term ID and Label**
GO:0036261 7-methylguanosine cap hypermethylation
currently this represents a single step, the conversion of a "7-(mono…
-
Hello @rhysf
I am trying to run synima on two genomes and other input files downloaded from ncbi (H99-GCA_000149245.3 and JEC21 -GCA_000091045.1), however, I run into this error at the step of runni…
-
**Use case:** - Grouping cell markers irrespective of whether they are recorded as gene, transcript or protein.
**Justification:**
'has plasma membrane part' is defined by the presence of a prot…
-
Things like the impact of a mutation on the affected protein's Molecular Function
-
I got the following error when running RATTwithGFF:
> converting chromosome_1.gff to chromosome_1.embl....
usage: EMBLmyGFF3 [-h] [-a] [-c CREATED]
[-d {CON,PAT,EST,GSS,HTC,H…
-
I wanted to transform the **gff** (`ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Homo_sapiens/reference/GCF_000001405.38_GRCh38.p12/GCF_000001405.38_GRCh38.p12_genomic.gff.gz`) to **…
-
_These are all of my notes for the Bladderwort** project from 08-28-2019 forward._
# Summary:
In this study, we aim to identify insulator and terminator elements in the Utricularia gibba (bladd…
lkov0 updated
5 years ago
-
Hi,
I have a concern regarding the sign of the logFC in the sigGenes.results.txt file. I'm using the logFC to split those junctions into groups depending whether they are upregulated in KO or downr…
-
Adapted from [NM_020451.2](https://www.ncbi.nlm.nih.gov/nuccore/NM_020451.2):
> The SELENON gene encodes for a selenoprotein, containing the rare amino acid selenocysteine (Sec). Sec is encoded by th…