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I trained the network and it saved all the necessary files for folds 0, 1, 2, 3 and 4. During inference, I am getting this error.
Traceback (most recent call last):
File "/scratch/sharanya/nnUNe…
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Thank you for sharing awesome work!
I did fine tuning for my dataset with pre-trained weight(small and base model)
It shows me great result.
Can you share the training script used to train the …
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Wrong filename (should be `splits_final.json` instead). This is problematic and should be further explained. The JSON split file **must be moved** in `nnUNet_preprocessed/DatasetXXX` and overwrite the…
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Hi Team,
In medical dataset UCL **prostate**, there are only **13** cases. When spliting data intro **dl_tr** and **dl_val**, their sizes are 9 cases and 3 cases, respectively.
When we run **sel…
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When I tried to use the trained model for real-time prediction, I found that using the functions already implemented in the project would be slower. It takes about 0.5 seconds to predict a frame in th…
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Dear contributors,
Thanks for this great work of your team
Upon attempting to execute nnUNetv2_extract_fingerprint, I encountered an issue. Below is the command I used along with the corresponding…
x0204 updated
9 months ago
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Hi team,
After preprocessing, I was looking to file .npz and figured out that **every case has its shape**.
So when you feed all these data to the network in the training process, how nnUNet deal…
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How to convert preprocessed images into the nii.gz format for display？
TSbme updated
6 months ago
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As the output folder only contains fold_all, I add a -f all after the provided inference command.
The command used for testing:
`nnUNetv2_predict -i ./data/nnUNet_results/Dataset704_Endovis17 -o .…
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Hi Team,
1. What does the function [configure_rotation_dummyDA_mirroring_and_inital_patch_size()](https://github.com/MIC-DKFZ/nnUNet/blob/95e74d8f50fd84c570820917f31ad9c72d30910b/nnunetv2/training/…