-
Hello,
I am running canu for a Drosophila size genome on a SGE cluster. For some reason that I am unable to figure out, the overlap store building is failing (please see below). I tried setting ovsMem…
-
Hi everyone,
I'm assembling a large genome of 1.5Gb with canu. While the assembly part works fine if I feed it corrected data, the -correct portion is slow, slow, slow.
I want to run in on a sigle m…
-
I was running canu with some new settings when it failed. Then, I went back to the same exact setting that worked earlier in the day and it still failed. According to `correction/1-overlapper/precompu…
-
Hi all,
I am starting the assembly pipeline with ~500 reads and the program finishes successfully without any errors.But nothing gets assembled. I noticed that only very few reads (~35) gets into the …
-
- description box needs max-height and inside-scroll
- print font is not there
- text overflows
 and it fails with these errors:
```
[scar@service1 canu_assemblies…
-
Hello,
I am trying to run Canu in our PBS system, however, got error like this.
Do you have any idea to fix it?
Thanks!
```
___________________________________________________________________________…
-
Hi,
I'm having a lot of trouble with trying to run canu.
My PacBio raw reads file is 82 Giga, in a fastq format.
I've tried several times to laucnh canu with the folowing command :
```
canu -p su…
-
Dear All,
I have a problem with using more efficiently the Memory for the mhap correction.
On the single machine with 64gb with 6/4 concurrency/threads settings I had to set memory to 20GB per 1 job…