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I have been trying to assemble a 10Mb genome with uncorrected nanopore data (3-4 chromosomes expected). We have a lot of data, is that the reason Flye fails at the end?
[2019-06-22 11:00:05] INFO: …
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I am interested to run your tool: Salmon. It is a great and easy tool to use.
I encounter this error by using:
```
./bin/salmon quant -t output.fa -g hgTables.gtf -l IU -a ../../pipeline/rna_seq/…
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As we are refactoring scvi, I'm wondering what the utility would be to spin off the i/o part of scanpy into it's own lightweight package that's more general for reading single cell pipeline outputs in…
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This error message is very similar to #94, but I tried the [fix from vondoReshi](https://github.com/hhoeflin/hdf5r/issues/94#issuecomment-412070367) and it doesn't solve this. Note that the filename e…
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Hi Seurat Team,
Thanks for developing this great package.
I have 4 CITE-seq datasets processed using 10X cellRanger pipeline with the "filtered data matrix" sets available.
I wish t…
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See for instance one of Jeremy's pages: https://usegalaxy.org/published/page?id=33b2b5739e9175b1
Sentry Issue: [GALAXY-MAIN-YAY](https://sentry.galaxyproject.org/organizations/galaxy/issues/152645/?r…
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Hi,
Thanks for this great tool and the great support you guys have provided here!
I had previously posted about running TRUST4 on multiplexed 10X 5' human PBMC scRNA-seq samples (https://github.…
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Dear authors,
for the last two days i was trying to assess and download different transcriptomic TCGA datasets from the TCGAbiolinks R package. However, with queries like the following:
```
rea…
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Hello,
I am analyzing multiome data (ATAC+RNA) and am wondering about the workflow. I have completed analysis through to WNN analysis to integrate the two modalities.
I have identified marker ge…
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Dear there,
I see CLASS is genome-guided transcriptome assembly. What is the meaning of that? My question is CLASS a de novo assembler or annotation-based methods?
If it is annotation-based met…