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mikolmogorov
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Flye
De novo assembler for single molecule sequencing reads using repeat graphs
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Flye 2.9.4 fails if running inside WDL due to long Cromwell path
#713
asteindorff
opened
54 minutes ago
0
Conda installation
#712
Narmatha99
opened
5 days ago
0
remove deprecated distutils usage
#711
natsukium
opened
1 week ago
1
thread exception - system ran out of memory
#710
samuelmontgomery
opened
1 week ago
2
Suggestions on using --keep haplotypes
#709
riyasj327
closed
4 days ago
2
No disjointigs were assembled - please check if the read type and genome size parameters are correct
#708
lqhungpt
closed
2 weeks ago
1
Stuck in repeat stage for low coverage sample
#707
JWDebler
closed
2 weeks ago
4
Missing & misassembled plasmids
#706
peradastra
opened
1 month ago
1
Should I filter based on quality ONT 10.4.1 simplex reads before using --nano-hq?
#705
SonjaKersten
closed
2 weeks ago
1
assembly error No disjointigs were assembled
#704
isabelluo
closed
1 month ago
1
A couple of installation issues.
#703
l-yampolsky
opened
1 month ago
3
Correcting bubbles step crash
#702
mprous1
opened
1 month ago
5
Is the assamble.fasta is redundant without "keep-haplotypes"
#701
YouxinZhao
closed
1 month ago
1
Flye reported an error
#700
HHHHerbs
closed
2 weeks ago
4
Samtools Library Issues
#699
schmigle
closed
1 month ago
1
minimap2 and samtools issues in running consensus stage
#698
Jerry-is-a-mouse
closed
1 month ago
1
The question after #683
#697
Jerry-is-a-mouse
closed
2 months ago
1
Abandoned dip_polish branch?
#695
mp15
opened
2 months ago
3
Inferring number of elements in an assembly based on multiplicity
#694
AceM1188
closed
1 month ago
2
Flye assembler should support spaces in file paths.
#693
sarahjeeeze
closed
2 months ago
1
I am running an assembly on an ONT reads, but it was aborted
#692
Wanjofu
closed
2 months ago
1
Fix aarch64 builds
#691
Assistant
opened
3 months ago
0
flye usage
#690
emilydolivo97
closed
2 months ago
1
Can't resume from a definite polishing step ?
#689
ImagoXV
closed
2 months ago
4
What parameter for R10.4.1 FAST mode data
#688
LogCrab
closed
2 months ago
1
Anomaly in resource usage
#687
VendelboNM
closed
2 months ago
7
Assembly of complex genomes with high rate of genome rearrangements
#686
Alteroldis
closed
1 month ago
2
Update minimap2 to v2.27 and use faster HQ ONT alignment
#685
Ge0rges
opened
3 months ago
1
free(): invalid next size (fast) at "Simplifying the graph"
#684
grinning-bat
closed
2 months ago
4
Meanings of both '--keep-halotypes' and '--no-alt-contigs'.
#683
Jerry-is-a-mouse
closed
2 months ago
7
corrupted double-linked list
#682
grinning-bat
closed
3 months ago
3
Metagenome
#681
joao1980
closed
3 months ago
1
direct RNA Seq data with flye?
#680
Viola-TA
closed
3 months ago
1
Best parameter for nanopore R9
#679
JMencius
closed
3 months ago
6
No disjointigs were assembled(WARNING: No overlaps found - unable to estimate parameters)
#678
ChloeXUAN1
closed
4 months ago
0
How does Flye resolve 'unbridged' repeats?
#677
Matteo-Paini
closed
3 months ago
3
Inclusion of reads <5000 results in increased fragmentation of assembly
#676
OKyne1
closed
4 months ago
2
Flye output only 1 contig
#675
LaurenBaena
closed
3 months ago
2
Positive and Negative Sense concatenating together for each contig
#674
BABRIGGS
closed
1 month ago
17
Update README.md - fix DOI so fully shown in README
#673
hyphaltip
closed
4 months ago
1
Better assembly with partial reads than full dataset
#672
stachyris
closed
3 months ago
2
Command '['flye-modules', 'assemble', '--reads'
#671
enriquepola1996
closed
4 months ago
2
Move _SixMetaPathImporter to using find_spec()
#670
pushkarnk
closed
4 months ago
2
Flye install fails with Python 3.12
#669
pushkarnk
opened
4 months ago
2
Using fly to detect contamination in a pure culture?
#668
Ge0rges
closed
4 months ago
1
Is the name of the first contig in assembly.fasta always supposed to be contig_1?
#667
jfnjdoh
closed
4 months ago
3
Is the final assembly function of the number of sequences ?
#666
ImagoXV
closed
4 months ago
6
Option to display unassembled reads?
#665
MarionPerrier
closed
4 months ago
1
Flye stops after minimap2 without any error message
#664
Kat0610
closed
2 months ago
4
Serial polisher
#663
atabeerk
closed
4 months ago
0
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