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Hi - excellent software, thanks! -
but I do have a problem. If i load a disk backed dataset, I cannot run `sc.tl.score_genes`.
Given these two sets:
```py
ad = sc.read_h5ad('scdataset.h5ad', …
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This is a first attempt at deriving a data format specification.
Once we figure out some of the APIs, we could include these in our config.vsh.yaml definitions (similar to https://github.com/openpr…
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Hi @kaizhang -
This is mainly a request for more documentation, as I didn't see this explicitly mentioned anywhere (though perhaps I missed it) but is likely useful to others.
I've followed your v…
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Hello `vitessce` team,
`vitessce` looks like an exciting tool and the ability to work in `R` has captured my interest as a tool that I could potentially use.
I saw another tool or pipeline (`WebAtla…
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Hello, everyone,
I am working om fly model. And I have met a problem when I was doing QC step use function pp.calculate_qc_metrics. I have got this error. Can anyone help me? Thanks. The code as fo…
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## System details:
#### Positron and OS details:
Positron Version: 2024.08.0 (Universal) build 83
Code - OSS Version: 1.92.0
Commit: f2238e0cf5fcc2a89b466d430775e135e9345852
Date: 2024-08…
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Hello!
I'm trying to install diffxpy on a docker.
I have already installed the batchglm and checked running `python -m unittest` with success.
I'm encountering the following error:
What am …
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
- [X] (option…
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Hi, Qian,
I am using adata as input of the h5ad file converted from Seurat. Adding data from RNA as X, adding counts from RNA as raw, transferring meta.data to obs.
During model training, I enc…
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There are a number of companies that use our tools, some of whom have expressed interest in helping out/ collaborating. How do we involve industry in this organization? Some questions:
* How do we …