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In dsgvg, I'm working on a MutablePathDeletableHandleGraph. I'd like to clear up the semantics of what happen when we delete nodes and edges that are contained in paths in this kind of handle graph.
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Hi,
I am using mmseqs2 for the taxonomy assignment using NR database. However, Estimated memory consumption is 2T. Is that normal? Also, my input is already protein. My another question is about th…
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Hi!
I recently ran `OrthoFinder` + `muscle` and `iqtree`. One of the IQTree runs failed with a numeric underflow, so I reran it with the `-safe` option. Now it's hard to resume from there if the M…
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## Expected Behavior
I try to use easy-linsearch and linsearch but both have same issue : empty files
First, I have try easy-linsearch with the line :
"$ mmseqs easy-linsearch /work/cbelliardo/6-en…
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```
While GASV works just excellent with the example bam file, provided on your web
site, it fails on my data. Here is the link for the bam
file:https://www.dropbox.com/s/fkra50hjk0d54bn/chr15_sim.b…
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Dear all,
after using hifiasm for a long time, we recently observed strange behavior for one assembly in particular.
When running hifiasm 0.19.8, the tool returns ERROR6 and other messages:
```
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```
What steps will reproduce the problem?
1. Build genome and reads .DAT files
2. Make jump databases
3. Attempt to align ~5M reads to the genome
What is the expected output? What do you see instead…
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I am having an issue with lastz_32 erroring out with the following similar messages:
```
FAILURE: in init_from_anchors(), structure size exceeds 2^32 (261823072 + 4189169024)
consider raising sc…
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The attached files misalign a bit. If you run virulign using the [nef](https://github.com/rega-cev/virulign/files/6044405/11676_nef.xml.gz) xml on [this alignment](https://github.com/rega-cev/virulig…