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While running a WDL on Google cloud with a very large task array I received the weirdest error:
```
"failures": [
{
"causedBy": [],
"message": "Task xxx.xxx:2292…
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Hi,
I'm trying to add an stepInput to a workflow step whose value is based on another input
e.g.
```python
self.input(
"readGroupHeaderLine",
String(),
…
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I noticed 1) works but not 2). Can we have else for conditional blocks (not just one-liners)?
### 1)
```
workflow merge {
Array[File] smallfiles = []
if(length(smallfiles)>2) {
c…
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hey there,
I know I already suggested finishing up with a 'what next?' section, but here's an additional idea.
Now that I know how to run workflows, troubleshoot them etc, I still find myself a …
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It would be nice if workflow level inputs were also displayed or maybe you could toggle them off/on or specify what you wanted to track. For instance we may want to know that the correct interval lis…
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A user in the forum was using particularly long filenames as keys to a map, causing his workflow to fail upon flushing metadata to the DB.
He was able to use a workaround of two maps having common …
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I am running pipeline version: v1.9.2. My pipeline runs till atac.macs2_signal_track, then the next atac.qc_report is not triggered. I have following questions about the pipeline:
> 1. Is there …
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Hi,
I saw the HiFi somatic workflow https://github.com/PacificBiosciences/HiFi-somatic-WDL/blob/main/figures/simple_workflow_diagram.png. After calling somatic SNV/INDEL(using deepsomatic, tumor/norm…
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I am trying to run the example JSON using singularity and the job keeps getting stuck without a clear error message. This is the command I'm running:
```
echo "source /broad/software/scripts/useus…