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Hello,
I'm trying to use PGAP however I keep running into issues and I was hoping someone might have an idea or solution.
I tried to run the command: ./pgap.py -r -o ERR4189738_Results -m 50g test…
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**tl;dr: We need a tutorial/lesson aimed at teaching CWL to complete beginners. Are you interested in helping to make this happen?**
Based on discussions with various people in the CWL user/develop…
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## Expected Behavior
Pass the test
## Actual Behavior
Fail test
## Workflow Code
tests/wf/vf-concat.cwl
## Full Traceback
I installed podman on Debian Sid.
I do not use podman so oft…
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### What is your question?
#### How to submit jobs to ray using celery
I've tried implementing a toy example for it. Below is the code for it.
```python
from celery import Celery, signals
imp…
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As noted by @boyangzhao in https://github.com/DataBiosphere/toil/issues/4091#issuecomment-1122732414, `toil-cwl-runner` does not seem to be able to read a CWL `File` object with a `location` set to an…
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Hi all,
I am looking into how to use dxCompiler with some trivial CWL files but I am not getting very far. Perhaps I am doing something wrong?
It appears to try and parse the CWL file as JSON, e…
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In short: CWL Expression が JS Expression と解釈されて参照できずに死ぬエラーっぽい。
何が問題か: Workflow の `inputs` で指定された `fastq` のファイル名を改変してツールの出力名に指定しようとして `valueFrom: $(inputs.fastq.nameroot)` をしたら JS が走って `TypeError: C…
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Hello,
In my recent PR, I found enabling debug logs into cwltool to be very useful even when running tool.
I was thinking I can set debug before using cwltool. I did this on a local branch and it w…
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- [x] Need to create a new section under https://www.commonwl.org/governance/ named "CWL Technical Team"
The team is initially responsible for approving new versions of the CWL standards befo…