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Please consider mentioning explicitly in the documentation of [`scanpy.api.tl.diffmap`](https://scanpy.readthedocs.io/en/stable/api/scanpy.api.tl.diffmap.html#scanpy.api.tl.diffmap) that _"the 0-th co…
veghp updated
3 years ago
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(1469, 0) is the shape of data returned by the code.
```python
[atac.txt](https://github.com/dpeerlab/Palantir/files/5059399/atac.txt)
// first load data
data = pd.read_csv("atac.txt")
dm_res = …
csy99 updated
3 years ago
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Dear Experts,
Thanks for developing such a great tool. We were wondering if this approach could also be used for different maps (Axial diffusivity, Radial diffusivity, etc). I saw FA, MD, and GFA h…
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Hi @hila-chefer,
First of all, congratulations on your paper, the proposal you present is really great!
I am trying to apply your method as an explicability mechanism to the BERT model that I am…
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Hi,
I have a question about a unique dataset. I have a dti file (with PE: A>>P) and a blipup file (with PE: R>>L).
I am trying to write the blipup file to the fmap folder (according to documenta…
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Dear @lululxvi
I am trying to solve a diffusion equation in 1D according to the examples, but some error occurs.The error message is as follows:
"""~~~~~~~~~~~~~~"""
Traceback (most recent cal…
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I am using palantir and scanpy for trajectory inference in single-cell RNA-seq dataset.
There is some issue with computing Palantir diffusion maps.
1. It gives me an error that is did not find adata…
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I am using palantir and scanpy for trajectory inference in single-cell RNA-seq dataset.
There is some issue with computing Palantir diffusion maps.
1. It gives me an error that is did not find adata…
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**Describe the bug**
When I convert these series (DWI) of dicom to nifti and then compute DTI and extract a RGB map from tensor, I can see that the tensors are not in the right direction. It should b…
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Hi,
We are running multiband 3 for diffusion imaging on a Prisma VE11C scanner.
CMRR release 016a.
Is there a recommendation for using the 32 versus the 64 channel headcoil ?
For each of those hea…